Kryptolebias marmoratus (mangrove rivulus): 108233626
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Entry
108233626 CDS
T05608
Symbol
shoc1
Name
(RefSeq) protein shortage in chiasmata 1 ortholog isoform X2
KO
K28108
shortage in chiasmata 1
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
kmr03036
]
108233626 (shoc1)
Chromosome and associated proteins [BR:
kmr03036
]
Eukaryotic type
Meiosis-specific proteins
Others
108233626 (shoc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF5587
Motif
Other DBs
NCBI-GeneID:
108233626
NCBI-ProteinID:
XP_017267688
LinkDB
All DBs
Position
LG1:complement(26623620..26637680)
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AA seq
1458 aa
AA seq
DB search
MMCEKSSFGLTELFSPLRFKALDYVFETSTTQKVRLNLLALPEPYLAGTGDLYPHGGKLP
DVTFRTPWVRGKVISSCKLFVGGSVFDELGGKNQPVISLESFCVENNAGLIPSSNPDSLK
DFDEDQFILLKEPQISDLSRESFLKWTNESEDLFIPEELVAPDYLPQLKRHLPSLKAKLS
RLKTLPVADPLLSSAGLPVSEDAMISCFRRCASYQKPPDVNSVNNQTCAHAQEEFLKEPL
PAGELLLLPAVIDTLQLNPQNRSTFYNISGLMNVSPEALNEQRPVLDVLHHDKKTSLPKT
SVDISQFDVPQKHEKESKLNESLTEFSGHVLPPAEIELDLILSPIPKRSLNAFCLSSSHL
QEEDLYPCGTMSLVAARTQKIMEAAVWKAEKHLTCVARFLLSEPDEHKPADDFQPLSGAL
AAFKLENQSFSGTELELQAELEIPRVFLGHSREFTEKMRFEPLTAREDEMEDFKKLLPED
LDVGSISLDFQNKALLHKETSVDSSQSSSLMQAESTNKKEEKPAAVFSTDAGKFPGAAVG
SSAQTNTINAAEVVFKTTQSSQKPELNPSSRSNLNNNPKSLVFTRRQPERNHDPLSDFIT
LRSLQAPPADSAPPNSADTEALEMNQQTQQEELRPPLEEMRTPDRRPEYTSAAVSGDASR
EQKPAAQRTSRIIGRPVSQSDPQDKPYSRVVQIQATDSQQRAYSELLAFAQPRLTSARQM
GLNFPSWGDFSCLAPDQTHFLLKQQERALCRAPAESAELVKDEEVLFNQAALVHVLVTFK
ELLLKCDLTTALEYLTKAATVCAEQSLRQLLKRLQILLFLSGKKQEANFKLLELQQLLAD
WLHNKKGNSSAEKILVMLSVGSDESRSLIFSSLSQVTGAAVTSVCPDEDMKRLNGAGVVS
RVHDSDCVVVFEQHVGPDFPWSCFSLVVEFDHPGPSPWSSVCRERSINHLTFNTSISEAD
AEKSLYLEDNVPFTVLVTEGLLNCLLLLQTLESGFNVNVLERSHSPSLQMLGGIHNYAVI
TVDESTAIVIQEQDELCEDRASEGLVMRLTALSLQYSCCWLILHCPDSQGGGFSSEAFNN
LVLLYSSLVLFGMKSEELDVKVLIVSEVLEMAKLIKQICFTTLMSSDRDPLSYLNRDWLT
AMPSQEEVCLSQFPCINPLVGQLMLDRAPSLQWLLGAPLPHLKELFPEVPHKVLKMFSDT
ILLYSSNADSKQPETVTTETNLETSPSRGPHTLFDQCEHMNSLHSEPFCREHTSFLHEAT
GAQGPFSEPDAEYSDFRLDLNRSFGSPNVDLRRSWTRNNLWKEEEKLPLWSHRAAGRVVG
RVNDDWTPRASPYLQTDDSPLKLSSVFSCSPVLQNSANSRASPRPVIHNDLQLPESDHII
YGLSPPPDVLWGQSATKCLSSSGGPASLGSRCWKGLERKRSGEAAGLFESVLEPSKRGRL
SFERVPGRRDGQTRLKLF
NT seq
4377 nt
NT seq
+upstream
nt +downstream
nt
atgatgtgtgaaaaaagcagctttggtctgactgaactcttctctcctctcagatttaaa
gctctggattatgtctttgagaccagcaccacccagaaggtaaggctgaacttgctggca
cttccggaaccttacctggctggtaccggtgacctttacccccacggtgggaagctgccg
gatgtcaccttcaggacaccctgggtcagaggaaaggtgatctcttcctgcaaactcttc
gttggtggttcagtgtttgatgaactgggaggaaaaaatcaaccagttatttctctagaa
agcttttgtgtggaaaacaatgcagggctgatacccagctctaatccggactcactgaag
gattttgacgaagatcagtttattcttttaaaagagccgcagatcagcgatttgtctcgg
gaatcatttctcaagtggacaaacgagagcgaagatctgttcatccctgaggagctcgta
gctccggattacctgccacagttaaagagacatttaccctcgctgaaagccaaactgtcc
agactgaagacgcttcctgtggctgaccctctgctgagctcagcaggacttcctgtctct
gaggacgccatgatcagctgttttaggcgatgtgcttcctatcaaaagcctccagatgtg
aactccgttaacaatcagacttgtgcacatgctcaggaggagtttcttaaagaaccactc
ccggcgggagagttgctgctgttacctgctgtgatcgacactcttcagctgaacccacaa
aatcgcagcaccttttataacatctctggcttgatgaatgtttctcctgaagcactgaac
gagcaacgtcctgtcctggatgtgcttcatcatgataagaaaacttctcttccgaaaact
tcagtggatatttctcagttcgatgtcccacagaagcatgaaaaggaaagcaagctgaat
gaaagcctgactgagttttcaggtcatgttctgcctccagctgaaatagagttggactta
attctgagcccgattcctaaaaggagcctgaacgccttctgtctgtccagctctcatctc
caggaggaagacctgtatccttgtggcacaatgtctctggtggcggcgaggactcagaaa
atcatggaggcggcagtttggaaggcagagaagcatctgacttgtgtggccaggttttta
ctgtcagagcctgatgaacataaaccagccgatgacttccagcctctgagtggagccttg
gctgcttttaaattagagaatcaaagtttcagtggcactgaactggagttacaggccgag
ctggaaatcccacgggtatttttgggccacagtcgtgagttcactgagaaaatgaggttt
gagcctctcacagccagggaagatgagatggaggacttcaagaaactgttacctgaagat
ttagatgttggatccatttctctggattttcaaaataaagctctactccacaaagaaacc
agtgtggattcgtctcagagctcctccttgatgcaagctgagagcacaaataagaaggaa
gaaaaacctgctgctgtcttcagcacagacgcaggcaagtttccaggagctgcggtcgga
tcgtctgctcaaacaaacacgatcaacgcagctgaggttgtctttaaaaccacacagagc
tcccaaaaacccgagctgaatccgtcctccagatcaaatctaaacaataacccaaagagt
ctggtgtttacaagacgtcaaccagagaggaaccatgaccctctgtctgacttcataaca
ctgaggtccctgcaggcgcctccagctgattcagcacctccaaactcagccgacactgaa
gcattagagatgaaccaacaaacacaacaggaggagctgcgtcctcccctggaggagatg
aggacacctgacaggaggccagagtacacgagtgctgctgtgtcaggagacgccagcaga
gagcagaaacctgctgctcagaggacgagtcggatcattggtcgtcccgtcagtcagtca
gaccctcaggacaaaccttacagccgagtcgtgcaaattcaggctacagacagccagcag
cgtgcctactctgagctgctggccttcgctcagcctcgtttgacttctgccagacaaatg
gggctgaacttcccttcatggggagatttcagctgcttggctccggatcaaacgcatttc
ctcctcaaacagcaggagagggccctctgcagggctccggcagagagcgcagagctggtc
aaagatgaggaggtgctcttcaaccaggctgctctggtccatgtgttagtgacattcaaa
gagctgctgctgaagtgtgacctgactacggctctggagtacctgaccaaggcagccacg
gtgtgtgccgagcagagtctgaggcagctgctgaagaggctacagatcctcctcttcctc
agtggcaagaaacaagaagccaacttcaaactgctggagctgcagcagctgctggctgat
tggctccacaacaaaaaaggaaacagctctgcagaaaagattctcgttatgctatcagtt
ggttctgatgaaagcagatctttgatctttagcagcttgagccaagtgaccggtgctgct
gtgacttcagtttgtcccgatgaagacatgaagaggctgaacggtgccggtgtggtcagt
cgcgtgcacgacagtgattgtgtggtggtgtttgagcaacacgtcggcccggacttcccc
tggagttgtttctctctggtggttgagttcgaccatccgggcccgtctccgtggtcctcg
gtctgcagagagaggagcatcaaccacctcactttcaacaccagcatctctgaggcagat
gcagagaaatccttgtatctggaggacaatgttcccttcacggttttagtgactgagggg
ctccttaactgtctgctgctgctacagacactcgagtcaggcttcaatgtaaatgtgctg
gaaagaagccacagtccatccctgcagatgctcggagggatccacaactacgctgtgatc
acagtggatgaaagcacggctattgttattcaggagcaggatgaactgtgtgaagatcga
gccagcgagggactggtgatgaggctgactgcgctctctctgcagtacagctgctgctgg
ctcatcctgcactgtcctgacagccagggtggaggattttccagcgaagccttcaacaac
ttggtgttactttattcatccctggtgctgttcggcatgaagtccgaggaactggatgtg
aaggttctgattgtgtcagaagtgttggaaatggccaagttgatcaagcagatctgcttc
accaccctgatgtcgagcgacagggatcctctcagctacctgaacagagactggctcacc
gcgatgccgtctcaggaggaagtgtgtctgtctcagttcccgtgtattaatcctctggtc
gggcagctgatgttggacagagcgccgtccctgcagtggctcctgggggcccctctgccc
cacctgaaggagctgttccctgaggtgccacataaagtcctgaagatgttcagtgacacc
atcctcctgtactcgagtaatgcagattccaaacagcctgaaacagtcactactgagaca
aacctggaaacaagcccttcacgaggccctcacaccctctttgatcagtgtgaacacatg
aactctttgcattcagagccattctgcagggaacacaccagcttccttcatgaagccacg
ggagctcagggccccttcagtgaaccagacgctgaatactccgattttagacttgacctg
aatcgctccttcggcagcccgaacgttgaccttcggagaagctggaccagaaataatctg
tggaaagaggaggagaagcttcctttgtggagtcacagagctgcagggagagttgttgga
agggtgaatgacgactggactccgagggcctccccatatctgcagaccgacgacagtcct
ctcaaactgagctccgtgttcagctgcagccccgttctgcagaattcagccaacagtcga
gcgtcgccacgccctgtcatccacaatgacctccagcttcccgagagcgatcacatcatc
tacggtctgagtccacctccggatgtcctctggggtcagagtgcgaccaagtgtctctcc
agcagcggaggtccggcctcgctcggctccagatgctggaaaggtttggagaggaagagg
agcggagaggcagccggcctgtttgaatcagtgctggagccgtcgaaaagggggaggctg
agctttgagagggtccctggcaggagagatggacagaccaggctgaaattattttaa
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integrated database retrieval system
