Kryptolebias marmoratus (mangrove rivulus): 108233772
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Entry
108233772 CDS
T05608
Name
(RefSeq) RNA exonuclease 1 homolog isoform X1
KO
K14570
RNA exonuclease [EC:3.1.-.-]
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
108233772
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
kmr03009
]
108233772
Ribosome biogenesis [BR:
kmr03009
]
Eukaryotic type
Pre-60S particles
RNases
108233772
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
EloA-BP1
RNase_T
Chal_sti_synt_N
KIX_2
Motif
Other DBs
NCBI-GeneID:
108233772
NCBI-ProteinID:
XP_017267936
LinkDB
All DBs
Position
LG1:26578052..26585212
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AA seq
1099 aa
AA seq
DB search
MFPSSGLFAHISCPFVQRGLCERPHCLYKHAAENAFGGLFKSSSVVDSTGNGSPRGAPVK
DQSTDECLHELARINKEIETVRHEVEQEQWRLSCYQTAEEADGRSDEPVSKCENSGPPSS
KDRKTHAQARKYVVDESKPRTDLEYDPLSNFSAALRSYSSPGKERKVKNREAKRPRHVHF
DQNGPSTHQAQMSRSPSPELLDESTEDCVLVIDVPLSPERTSGQDQRSVAVKSSQVKIET
ASLNSPPTSGKNPEVVNVAVSSSSRDMIKVHNCYVAKNDPESPTCDDHKESENADGPVVD
LSGYIKALESECQNTSFQSAEAVEKTTKPADFPITSDQQGHNSLLELAGGVEKGKLQRKS
TMTQEQAEAAQGSSQFSYQNVSSVQSHSGAESSESTEQLLHPETEAVIVINSSSDDEEEE
GEEEELSCAEMELSDSDPMEECYRIFMEANGEETRNEEHPDMSAEPDINAEKPKVNTTIQ
ALPGKKRVAHEATNLEQPLAKSRPQPQVLVPLREPAASGFGSRPSVTSKIQQVQQRASML
TASVKASQAFVCSTSQAKLETQSAPSAPGPEILQPDPAHSAYLNYIPVGTAVIEVGNNLH
LILPQGSFPLSVASTSSPVTSVLTPVNQVHPSLVSVKQPNNPPAVTVLPRYRSAAPVLIA
APARRPVLGSAFSSTLHSTAAPTTSQAPVQAAAKLRPMKRKLKQETMKDKVPHDVRQRYV
NMFTEEFLKTTPNVNDAFEKALAEERSVYNRSVNRLKYLSVAVNALKRLKNQNVAAKSEK
KVQSQRPKGNIPFNMKKLKQNADLALYESLKDYVLTEEKMIENNYPVQHPEKPGSAVLFA
DKKVSTDPLKRICCRCGATYSVSQTGKHIRKEECNYHYGKGVEKRVPGGVETRYSCCQGI
MGTPGCQVFKLHVHDSLSLDGFVSTAPRCPSDTSCPGVYSLDCEMCYTLQGLELSRVTVV
NSSLQVIYDTFVRPDNEVIDCDTRFSGIGEEDLKGNHTPLRKVQETLLSFISADTILVGH
ELETDLCLLKLLHGMVVDTSVVFPHRLGPPYKLSLNTLTAEHLRRIIQESVCGHDTAEDA
AACMELMLWKMKEDGKLKK
NT seq
3300 nt
NT seq
+upstream
nt +downstream
nt
atgtttccctcgtccggtctttttgctcatataagctgtcctttcgtacaacgagggctt
tgtgagcgaccccactgtttgtacaaacatgcggcggaaaatgcgtttggtggcttgttt
aaatcgtcatccgtcgtggactcaacagggaacggcagccctcgtggagcaccagtgaag
gatcagtccacagatgagtgcctccatgagttggcgagaatcaacaaggagattgaaact
gtgaggcacgaggtggagcaggagcagtggcgcctgtcgtgctaccagactgctgaggag
gcagacggcagaagcgacgaacctgtctcaaagtgtgaaaacagcgggccgccttcaagc
aaagatcgtaaaacccatgcacaagcaaggaagtatgtggtagacgagtcaaaaccaagg
actgatttagagtatgacccgctgtccaacttttctgctgccctgcgctcctacagctca
ccgggcaaggagcgcaaagtgaaaaaccgagaagcgaagagaccgagacacgtgcatttt
gaccaaaacgggccgtccactcatcaagcccagatgtcccgatcgccgtctccagagctc
ctggatgagtccactgaagactgtgtcctggttattgatgtccctctgtcacctgagaga
acgagtggtcaagaccagagatctgttgcagtcaaatcctctcaggtgaaaatagaaacc
gcttcccttaattctccaccgacgagcgggaaaaaccctgaggtggtaaatgttgctgtt
tcatcttcatcaagagacatgatcaaagtgcataactgctatgtggctaaaaacgatcca
gagtcacctacctgtgatgaccataaagaatctgaaaatgctgatggacctgttgttgat
ttaagtggatatataaaagctcttgaaagtgagtgtcaaaatactagttttcagtctgct
gaagcggtagagaaaaccaccaaacctgcagattttcccatcacctcagaccaacaaggt
cacaacagtcttcttgaattggccggtggtgttgagaaaggaaagctgcagaggaaatcc
accatgacccaggagcaagcggaggcggctcagggcagcagtcagttctcatatcagaat
gtttcgtccgtacagtcgcacagcggagctgaatcgtctgaatccactgagcagcttctg
catccagaaaccgaggcggtgatagtcatcaattccagctctgatgatgaggaggaggag
ggagaggaggaagagctcagctgtgcagaaatggagctttctgacagtgacccaatggag
gaatgctacaggatcttcatggaggcgaacggcgaggaaacaagaaatgaggagcatcct
gacatgtctgccgaacctgatataaacgcagagaagccaaaggtcaacaccacgatccaa
gctttaccggggaagaagagggtggcccatgaagccacaaatctagagcagccactggct
aagagtagacctcagccccaagtcctggtgcctcttcgggagccagcagcttcagggttt
ggctctcggccttccgtcacctctaagatccagcaggtacagcagagagcctccatgctg
accgcttcagttaaagccagccaggcttttgtttgctccacaagccaggcaaagctagag
acgcaaagtgcaccttctgctccaggtcctgaaatccttcaacctgatccagcgcacagt
gcttatttgaactacatccctgtgggaaccgcagttattgaagtaggcaacaacttgcac
ttgatcctcccacagggcagcttccctctgtctgttgcctccacctccagcccagttact
tcagtgctaactccagtgaatcaagtgcatccaagtctcgtctcagtcaaacaacctaac
aatccacccgcagtcacagtcctgccaaggtatcgctcagcagcacctgtgctcattgct
gctcctgcacgaaggcctgtgcttggctctgctttttcatcgactttacattcgacagct
gctcctacgacgtctcaagctcctgtccaggcagctgctaagctaaggcctatgaaacgt
aagctgaagcaggagactatgaaggacaaagtcccccatgatgttcgtcagcgttacgtg
aacatgttcaccgaggagtttctcaaaacgacacccaatgtcaatgatgcttttgagaag
gccctcgctgaggagagaagtgtgtacaaccgcagcgtgaacagacttaaatatctgagc
gtcgcagtgaatgcactaaagaggctgaagaatcaaaacgttgctgctaaaagtgaaaaa
aaggtccagagtcaaagaccaaaaggcaacatcccatttaacatgaagaagttgaaacaa
aatgcagatttggctttgtatgaaagtttgaaagattatgttttgaccgaggaaaaaatg
attgagaacaactatcctgtccagcacccagaaaaacctggttctgctgttcttttcgct
gacaagaaagtgagcacagacccgcttaagaggatctgctgtcgatgtggggccacgtac
tctgtgagtcaaacaggcaaacacatccgcaaagaggagtgcaactaccattatgggaaa
ggagtagagaagagagtgccgggtggagtggagacccgctacagctgctgccagggaatc
atgggaactcccggatgtcaagtgtttaagctgcatgtccatgattccctcagccttgat
gggtttgtttctactgccccgagatgtccctcagacacgagctgtcctggagtttactcc
ttggattgtgaaatgtgttacacccttcaaggtctggagctgtccagagtgacggtggtc
aactcgagtcttcaggtcatctatgacaccttcgtcagacctgataacgaggtgatcgac
tgcgataccaggttttcaggcattggtgaggaggatctgaagggtaatcacacccctctc
agaaaggtccaagagaccttgttgagcttcatcagtgctgacaccattcttgttggacat
gagctggaaacagacctctgtttactgaagttgcttcatgggatggtggtggacacttcg
gtggtcttcccccaccgtctaggtccaccttacaagctgagcctgaacaccctcacagct
gaacacctcaggaggattatccaagagagtgtttgtggccacgacactgcagaagatgca
gctgcctgcatggagcttatgctgtggaagatgaaagaagatgggaagctaaaaaaatga
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