KEGG   Kryptolebias marmoratus (mangrove rivulus): 108234233
Entry
108234233         CDS       T05608                                 
Symbol
seh1l
Name
(RefSeq) nucleoporin SEH1 isoform X1
  KO
K14299  nucleoporin SEH1
Organism
kmr  Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr03013  Nucleocytoplasmic transport
kmr04150  mTOR signaling pathway
Brite
KEGG Orthology (KO) [BR:kmr00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    108234233 (seh1l)
 09130 Environmental Information Processing
  09132 Signal transduction
   04150 mTOR signaling pathway
    108234233 (seh1l)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:kmr03019]
    108234233 (seh1l)
   04131 Membrane trafficking [BR:kmr04131]
    108234233 (seh1l)
Messenger RNA biogenesis [BR:kmr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     108234233 (seh1l)
Membrane trafficking [BR:kmr04131]
 Autophagy
  Other autophagy associated proteins
   SEACAT/GATOR2 complex
    108234233 (seh1l)
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_WDR5 WD40 WD40_Prp19 Beta-prop_IFT122_1st Beta-prop_WDR3_1st Beta-prop_EML_2 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 Beta-prop_RIG_2nd Beta-prop_WDR3_2nd WDR90_beta-prop_4th EIF3I WDR55 Beta-prop_EIPR1 WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd ANAPC4_WD40 Beta-prop_WDR36-Utp21_2nd Beta-prop_TEP1_C Beta-prop_WDR90_POC16_2nd Beta-prop_WDR35_TULP_N Beta-prop_WDR19_1st Beta-prop_IFT140_1st
Other DBs
NCBI-GeneID: 108234233
NCBI-ProteinID: XP_017268766
LinkDB
Position
LG16:26156725..26165816
AA seq 412 aa
MFVARSIAADHKDLIHDVSYDFHGRRMATCSSDQSVKVWDKSENGEWLCTASWKTHSGSV
WRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKQRGLSHWIKRTTLVDSRTSVTDVK
FAPKHMGLMLATCSADGVVRIYEAPDVMNLSQWSLQHEISCKLSCSCISWNPSSSRAHPP
MFAVGSDDSNITYGGKVQIYEYNENTRKYSKAETLMTVTDAVHDIAFAPNLGRSFHVLAI
ATKDVRIFKLVPLRKESTTTGPTKFEVQIVAQFDNHNSQVWRVSWNITSTLLASSGDDGC
VRLWKANYMDNWKCTGILKGDGSPLTGLSGQPTAMSTVVGSSLQTSQNALNGLSAGRYFF
PPLDPPRAGTRYGHLLPPSSLIEHCDAEPVIQPLSHRSSSRVLLSLPEAEEQ
NT seq 1239 nt   +upstreamnt  +downstreamnt
atgtttgttgctcgcagtatcgccgcggaccataaagatctaattcacgatgtctcgtat
gattttcacggccggagaatggcaacttgctccagtgaccaaagtgtcaaggtttgggac
aaaagtgagaatggagagtggctctgcacagccagctggaagacacacagtggatcagta
tggagagtgacctgggcccatccagagtttgggcaggttctggcctcctgctccttcgac
agaacagctgctgtttgggaggagatcgtaggggaatccaatgacaaacagagagggctg
agccactggataaagagaaccacgcttgtggacagcagaacgtcagtgactgatgtaaag
tttgctcctaaacacatggggctgatgctggccacctgctctgcggatggagtcgtgcgg
atttacgaggctcctgacgtgatgaacctgagccagtggtccctgcagcatgaaatctca
tgcaagctcagctgcagctgcatatcttggaatccttccagctctcgtgcccaccctcca
atgtttgctgtgggaagcgatgacagcaacataacatacggtggaaaggttcagatctac
gaatataatgaaaacacgcggaaatacagtaaagcagagaccctgatgacggtcacagat
gcagtccatgacattgcattcgctccaaacttgggaagatctttccacgtgcttgccatc
gcaacaaaagatgtcagaatatttaagcttgttcctttaaggaaggagagcaccaccaca
ggaccaaccaagtttgaggtgcagatcgtggctcagtttgacaaccataactcccaggtg
tggcgcgtaagctggaacatcaccagcaccctgttggcttcttcgggggacgatggctgt
gtacggctatggaaagctaactacatggacaactggaagtgcacgggcattctgaagggg
gacggcagcccactgacaggcttatcgggtcaacccacagccatgagcaccgtggtgggc
tcctccctccagacctcccagaatgccctgaacgggttgtcagcaggaaggtatttcttt
ccacctttggatcctcccagagcggggaccaggtatggtcacctgctccctccttcctcg
ctcatagagcactgtgatgctgagcctgttattcagcctctttcccacagaagctcctct
cgagttctgctgtctctgccagaagctgaagagcaatga

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