Kryptolebias marmoratus (mangrove rivulus): 108234286
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Entry
108234286 CDS
T05608
Symbol
lsm4
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr03018
RNA degradation
kmr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108234286 (lsm4)
09123 Folding, sorting and degradation
03018 RNA degradation
108234286 (lsm4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kmr03019
]
108234286 (lsm4)
03041 Spliceosome [BR:
kmr03041
]
108234286 (lsm4)
Messenger RNA biogenesis [BR:
kmr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108234286 (lsm4)
mRNA degradation factors
5'-3' decay
Lsm complex
108234286 (lsm4)
Spliceosome [BR:
kmr03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
108234286 (lsm4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
108234286
NCBI-ProteinID:
XP_017268833
UniProt:
A0A3Q2ZU29
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All DBs
Position
LG24:6053997..6056200
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AA seq
144 aa
AA seq
DB search
MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
IRGSTIKYLRIPDEIIDMVKDEVVSKGRGRGGGQQNKQQGKGRGGPGRGVFGGRGRGMSG
PGRDQQQQQPDKKPGKPQGMKNQH
NT seq
435 nt
NT seq
+upstream
nt +downstream
nt
atgcttcctctgtctctgttgaagactgcccagaatcaccccatgctggtggagctgaag
aatggtgagacctacaacggccatctggtcagctgtgataactggatgaacatcaacctg
agagaagtcatctgcacgtccagggatggagataaattctggaggatgcccgagtgttat
atccgaggaagcaccatcaagtatttgcggatccccgatgagatcatcgacatggtgaag
gatgaggtggtgtcgaagggccgcggacgcggtggcggccagcagaataaacagcagggc
aaaggaagaggaggacccggccgaggtgtgttcggcggccgtggcagagggatgtctggt
cctggtcgggatcagcagcagcagcagccagataagaaaccaggcaaaccacagggcatg
aagaaccagcactaa
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