Kryptolebias marmoratus (mangrove rivulus): 108234349
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Entry
108234349 CDS
T05608
Symbol
upf1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr03013
Nucleocytoplasmic transport
kmr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108234349 (upf1)
03015 mRNA surveillance pathway
108234349 (upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kmr03019
]
108234349 (upf1)
Enzymes [BR:
kmr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
108234349 (upf1)
5.6.2.5 RNA 5'-3' helicase
108234349 (upf1)
Messenger RNA biogenesis [BR:
kmr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
108234349 (upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
108234349 (upf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
DEAD
nSTAND3
AAA_16
Helicase_RecD
ATPase
SRP54
UvrD-helicase
UvrD_C_2
AAA_22
AAA_5
Motif
Other DBs
NCBI-GeneID:
108234349
NCBI-ProteinID:
XP_017268975
LinkDB
All DBs
Position
LG24:complement(6031759..6043213)
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AA seq
1102 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYDFTDFTLPSQTQTQGQTQSQLDSQVNG
PDEGLHNGGVDDSVAKTSQLLGELNFEEDEEDTYYTKDLPIHACSYCGIHDPACVVYCNT
SKKWFCNGRGNTSGSHIVNHMVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA
KADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITA
QQINKLEELWKDNPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK
LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIG
HVIKVPDNYGDEIAIELRSSVGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVS
GYIYHKLLGHEVEDVTIKCQLPKRFTAPGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGK
TVTSATIVYHLSRQGNGPVLVCAPSNIAVDQLTEKIDKTGLKVVRLCAKSREAIESPVSF
LALHNQISNIDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCV
GAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKA
GLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQ
WPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEG
QRSYLVQYMQFSGSLHTKLYQQVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRR
LNVALTRAKYGVIIVGNPKALSKQPLWNNLLNYYKEQKVLVEGPLNNLRESLMQFSKPRK
LVNTINPGGRFMSTAMYDAREALIPGSAYDRSSAAGRPSNMYFQTHDQIGMIGAGPGHMA
AMNIPIPFNLVMPPVPPPSYLGQTNGPAAGRGAMKGKPGRGGRQRVRGSANQGASQGNGP
NSQASQDGASQSFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALS
QDSTYQGERAYQHGGVTGLSQY
NT seq
3309 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggccgagctcccaaaccctcaccttcctggacaccgaggaa
gccgagctgctcggagcggacacccagggctccgagtacgacttcaccgacttcacgctt
cccagtcagacccaaactcaaggccagacccagagccagctggacagccaggttaatggt
ccggatgaaggtcttcacaacggaggagtggacgactctgtggccaaaaccagccagctg
ctgggcgagctgaactttgaggaggacgaggaggacacttactacaccaaagatcttcct
atacacgcatgcagctattgtggtatccatgacccagcgtgtgtggtgtactgtaacacc
agcaagaagtggttctgtaatggccgtggcaacacatctggcagccacatcgtgaaccac
atggtgagggccaagtgcaaagaggtgaccctgcataaagacggaccgctgggtgaaact
gtgctggagtgttacaactgtgggtgtcgcaacgtcttcctcctgggctttatcccggcc
aaagccgattctgtggtggtgcttctttgcaggcagccttgtgccagccagagcagcctg
aaggacatcaactgggacagctcacagtggcagccgctgatccaggatcgctgctttttg
tcctggctggtgaagatcccatcagagcaggagcaactccgagcccgtcagatcactgcc
cagcagatcaataagctggaggaactctggaaggacaatcccagcgctaccttggaagac
ctggagaaacccggtgtggacgaggagccccagcatgtgctgctgcgctacgaggatgct
taccagtaccaaaacatcttcggccctttggtcaaactggaggctgactatgacaaaaag
cttaaggagtcacagactcaagacaacataacagtcaggtgggatcttggactgaacaaa
aagcggattgcctatttcactctgcccaagacggattcaggtgatatgcgactgatgcaa
ggtgatgagatctgcctgcgctacaagggagacttggctcctctgtggaagggcattggt
catgtcatcaaagtaccagacaactatggggatgaaattgccattgagctgcggagcagc
gttggagctcctgtggaaatcccacacaacttccaggtggactttgtttggaaatccact
tcttttgacaggatgcagagcgccctgaaaacctttgctgttgatgagacctccgtgtct
ggctatatttaccacaagctcctgggccacgaggtcgaagatgtcaccatcaagtgccag
ctgccgaagcgcttcactgccccgggtctgcctgaccttaatcactcccaggtgtacgca
gtaaaaactgtgctgcagaggcctctcagtctgatccagggtcctcctggcactgggaaa
accgtcacctcggctacaattgtttatcacctgtcccgacagggcaacgggccggttctg
gtgtgtgctcccagtaacatcgctgtggaccagctgaccgagaagattgacaagaccggc
ttgaaggtagtcaggctgtgcgctaagagccgcgaggccattgagtccccggtgtctttt
ctggctctgcacaaccagatcagcaacatagacagtatgccggagcttcagaaactacag
cagctgaaggatgagactggcgagctgtcgtctgctgatgagaaacgctacagggccttg
aagcgcactgcagagagggagctgctgatgaacgctgatgtgatttgctgcacctgtgtt
ggagctggagatccccgtctggccaagatgcagtttcgctccatcctgattgatgagagc
acccaggccacagaacccgagtgtatggtgcctgtggttctgggagcgaaacagcttatt
ctcgtgggtgaccactgccagctcggtcccgtggtgatgtgcaagaaggcagccaaggcg
ggtctgtctcagtctctgttcgagcggctggtggttctgggaatccggccgatccgcctg
caggtccagtaccgcatgcacccagctctcagtgccttcccctccaacatcttctacgag
ggttccctgcagaacggcgtcactgcagctgatcgcatcaagaaaggcttcgacttccag
tggcctcagcctgataagcccatgttcttctacgtgactcagggtcaggaggaaatcgcc
agttctggaacgtcctaccttaacaggactgaggcagccaacgtagagaaaatcaccacc
aggttgctgaaagcgggagcgaaacctgatcagatcggcatcatcacgccctacgagggt
cagcgctcctacctggtgcagtacatgcagttcagtggctcgctccacaccaagctctat
cagcaagtggaaatcgccagcgtggacgccttccagggccgagagaaggacttcatcatc
ctgtcttgcgtccgtgccaatgagcaccaaggcatcggcttcctgaatgaccctcgccgt
ctcaacgtggcgctgacccgagccaagtacggcgtgatcatcgtggggaaccccaaggcc
ctctccaagcagccgctgtggaacaacctgctgaactactacaaggagcagaaggtcctg
gtggagggacccctcaacaacctgcgggagagcctcatgcagttcagcaagccccgtaaa
ctggtcaacaccatcaatcccggcgggcgtttcatgagtactgccatgtacgatgcccgc
gaggctctcatccctggctcggcctacgaccgcagcagtgctgccggacgtccatccaac
atgtactttcaaacgcacgaccagatcgggatgattggagcgggccccggccacatggcg
gccatgaatattcccatacccttcaacctggtgatgcccccggtgcctccacccagctac
ttgggtcagaccaacggccccgctgcaggtcgtggtgcgatgaaggggaaacccgggcgt
ggcgggagacagagggtccgtggttcagcgaaccaaggcgccagtcagggtaacggacca
aacagccaggcgagccaggacggggcctcccagtccttctcccaggggccactgactcag
ggttacatctccatgagccagccctcccagatgagccagcctggcctctcccagccagag
ctgtcccaggacagctatcttggcgatgagttcaagtcccaaatcgacgtggctttgtcc
caggactcgacttaccagggtgaacgtgcgtaccaacatggcggggtgaccggactgtca
cagtactaa
DBGET
integrated database retrieval system
