Kryptolebias marmoratus (mangrove rivulus): 108234587
Help
Entry
108234587 CDS
T05608
Symbol
pdlim5a
Name
(RefSeq) PDZ and LIM domain protein 5a isoform X1
KO
K19867
PDZ and LIM domain protein 5/6/7
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
108234587 (pdlim5a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
kmr04990
]
108234587 (pdlim5a)
Domain-containing proteins not elsewhere classified [BR:
kmr04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
108234587 (pdlim5a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LIM
PDZ
DUF4749
PDZ_6
Motif
Other DBs
NCBI-GeneID:
108234587
NCBI-ProteinID:
XP_017269366
UniProt:
A0A3Q3BDF0
LinkDB
All DBs
Position
LG1:complement(20168870..20224469)
Genome browser
AA seq
571 aa
AA seq
DB search
MSSNYSVTLLSPAPWGFRLQGGKDFNMPLTISRLTDGGKAAKGGIAVGDMVLSIDGISTE
GMNHLEAQNKIKNCAGNLSLTLQKISSVCKPPPVAPKGDRADIIKPVAITRPSPPPHPQP
HCSVPYNKVPRPFGGCPSQSECSPSQSLFTTVIPSPSSAFTPALSYTSPLPPPPPPPRPP
SPPPFSYPSSASSSPPVLVPPQPSVYNTPINLYSAENACEVAMGQMRGLLESQGAALPLQ
FNGAPRKHIVDTDIHFYHVPTHADASRKRIMEDTEDWRPRTGTTQSRSFKILAQITGTEN
VQNEEADSAKKTNEDAEEPGLSSHESAVVKTMIKGAAPNYGQGLITPSFGKKGSTSSVLR
GPVPPRPAPQPHPKDEDTLVQMAEHFPAGMRTPMCAHCNMVIRGPFLVAMGKSWHKEEFN
CAHCRTSLADIGFVEEKGCVYCEHCYEEFFAPTCSRCRAKILGEVINALKQTWHVYCFMC
AACQQPIRNNTFHLQDGEPYCEQDFYSLFGTACHGCEFPIEAGDKFLEALGYTWHDTCFV
CAVCCTTLEGQTFFSRKDKPLCKKHAHSVKI
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcaactacagcgtcaccctgttaagcccggccccctggggcttcaggctacag
ggaggaaaggacttcaacatgcccctcaccatctccaggctgacggatggtgggaaagca
gctaaaggtgggattgctgttggagacatggttctctccattgacggcatttcaacagaa
ggcatgaaccacctggaggcccagaacaaaatcaagaactgtgccggcaacctcagcctc
actctgcagaagatctccagtgtttgtaaaccccctcccgtggccccaaagggcgacaga
gcagacatcattaaaccagtagccatcacccgtccatctccacccccccacccccagcct
cattgctctgtgccctacaacaaggtccccagaccttttggggggtgtccgtcacagagt
gaatgttctccctcacagtcacttttcaccaccgtcatcccttcaccatcctcggccttc
actcctgccttatcctacacgagtcctcttcctcctcctcctcctcctcctcggcccccg
tcccctcctccgttctcttacccatcatctgcctcctcctcccccccggtcctcgtcccg
ccccagccgtcggtgtataacactccgatcaacctgtactctgctgagaatgcgtgtgag
gtggccatggggcagatgaggggcctgttggagagtcagggtgcagccttaccacttcag
tttaatggagctcccaggaaacacatcgtggacacagacatccatttttaccacgtgccc
actcacgctgatgccagcagaaagcgtataatggaggacacagaggactggcgtccacgc
acgggcaccacccagtccaggtccttcaagattctggctcagatcaccggcaccgagaac
gttcaaaatgaggaagctgattcagccaagaagacaaacgaggatgctgaggagcctgga
ctcagctcccatgagtctgcagttgtcaagactatgatcaaaggagctgctccaaactat
ggccaaggtttgatcaccccctcttttggaaagaagggaagcaccagttctgtcttgagg
ggtccggtgcccccccgacctgcgcctcagccccaccctaaagatgaggacacactggtg
cagatggcagaacattttcctgctgggatgcgaacgcccatgtgtgcccactgcaacatg
gtcatcagagggccatttttggttgcaatgggaaaatcgtggcacaaggaagaatttaac
tgtgcccactgccgcacttccctggcagatataggcttcgtggaggagaagggttgcgtg
tactgtgaacactgctatgaagagtttttcgctccaacttgcagccgctgccgggccaag
atactcggggaggtgataaatgccctcaaacaaacatggcatgtctactgcttcatgtgt
gctgcctgccagcagccaatcagaaacaacactttccacctgcaggatggagagccttac
tgtgagcaagacttttacagtttgttcgggaccgcttgccatggatgtgagtttcccatc
gaggctggagacaaattcctggaggcacttggttacacctggcatgacacctgcttcgtt
tgtgctgtgtgctgtaccactctagagggccagactttcttttcgaggaaggacaaacct
ctttgcaagaagcatgctcactcagtgaagatatga
DBGET
integrated database retrieval system
