Kryptolebias marmoratus (mangrove rivulus): 108234677
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Entry
108234677 CDS
T05608
Symbol
scaf8
Name
(RefSeq) SR-related and CTD-associated factor 8 isoform X1
KO
K13191
RNA-binding protein 16
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
kmr03021
]
108234677 (scaf8)
03041 Spliceosome [BR:
kmr03041
]
108234677 (scaf8)
Transcription machinery [BR:
kmr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
108234677 (scaf8)
Spliceosome [BR:
kmr03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
108234677 (scaf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
Transformer
RRM_occluded
DUF3525
Motif
Other DBs
NCBI-GeneID:
108234677
NCBI-ProteinID:
XP_017269544
UniProt:
A0A3Q3AK48
LinkDB
All DBs
Position
LG10:16922952..16944192
Genome browser
AA seq
1372 aa
AA seq
DB search
MEAVKAFNNELYSLTEYKPPISKAKMTQITKSGIKAIKFYKHVVQSVEKFIQKCKPEYKV
PGLYVIDSIVRQSRHQFGTEKDVFAPRFSKNIIATFQHLYRCPPDDKSKIVRVLNLWQKN
AVFKSDIIQPLLDMAAGIAPPSTTPVLPSSAAPINNTTPGTPATPATPANIVQGLPDWAS
QITNTDTVAAVAQILQSPQGQQLQQLVQSLQMQQQKPQPSLLQALDAGLVVQLQALTAQL
TAAATANSLNPLEQRVSSFNKKLLGPFDFGNDSERSEEPKKDTSSSQLPMVSEPINSSLF
HQLAEQLQQQNLEQFQKQLLEHQQKAMSIEGQDSIFGQENSVTAAQNSSQPQLPEPENKI
DDSIDNQQQDMDLDEGPDGMEEEIFEPEEKKTISARSRTRSRSRSRSPKRRRSRSRSGSR
KRKHRKRSRSRSRDRKRKSSRSYSSERRAREREKERQKKGLPPIRSKTLSVCSTTLWVGQ
VDKKATQQDLTNLFEEFGQIESINMIPPRGCAYICMVHRQDAYRALQKLSTGSFKIGSKI
IKIAWALNKGVKQEYKQFWDADLGVTYIPWEKVKVDDLDGFAEGGIIDQETVNDEWEMAK
SSETAKEMTSQPVSTEATVVSNTQTETFSQQVAMMPVQLPVAQAVPSVGLVPPTFPVSMS
IPPPGYGPPPPFIRPTFNATQPPPGFLQAQHTAGMASATTLQPSVSSSQEAVKESPFSTM
IPPTSTIPGSFMPSAIPGPGIFPPVGVQTQQANNEKIPQSAEGMGAAAELTLQGMQNAVR
SGIGLLGMHPTASLTHPLHQSGLSGQRMPGLLPLDVRPNLLQPGAAARFPLLMQQGPAQQ
AAGLLDSSLQAQARPRAPFPHMDLFNRPPNLTSETVSKTEDESSSGADEGKDQDYRFPPI
EKQSTGLLRTPPPEHREPLGGGGGPGGGGRPPLLQTPGTQPVRSSLVGRLQALAGFTPDN
RWNQTKGDFDERDGMRGGPQAPGGPKGFQEERPTSGQSFPNRFDNRPGATGGAGPVGGPQ
PWNRGGGPTAPFSSELHKDLDDRRRPWERQRDRDERDVDFRRDMNGNRHSRERERERERE
RDRDRGRERTREHERDRDGDKEKERERGGWTPLLPLPTPLLPTPPLNPNLTLNQGKLLVP
LKLNPQVQPRFQSPLFPQSQAKPPLLGLKQPLPQAQIRSPPPLQNQAPVPEPQSETPDPA
KTPQAQSAGSPHPSSDSQGQSTLTDPLTQPEPSPQPETPAQMESPPQTTSSPNTKTPILH
SPLAFTQADSPPEDPTPTVEKQEEPQNDEEGSQEERFCVPQPEWVNGPEKDHVNVAEPTP
DPEHHSFLSESETEPKQEQVSSAKDLNNEQKEPMEEAPSQPVVDTVTDTEGT
NT seq
4119 nt
NT seq
+upstream
nt +downstream
nt
atggaggccgttaaagcatttaacaacgagctgtactcgttgactgagtacaagccgccc
atctccaaggccaagatgactcagatcaccaagtctggaatcaaggctataaaattctac
aagcatgttgtccagagtgtagagaagttcatacagaagtgcaagccagaatacaaggtc
ccggggctgtatgtcatcgattccatagtcagacagtcgcgtcaccagtttggcacagag
aaagatgtttttgccccacgcttcagcaagaatatcattgcaaccttccagcacctctac
cgctgtcctccagatgacaagagtaagatcgtgcgagtcctaaacctgtggcagaagaat
gccgtcttcaagagtgacatcattcagcctctgctggacatggctgcagggattgctcct
cccagcaccacgcctgtcctgcccagcagtgctgctccgataaataacactacacctggc
accccagctacacctgcgactccagcaaacattgttcagggtctgcctgactgggcatcc
cagattacaaacacagatactgttgctgctgttgcacagatcttacagagtccccaggga
caacagcttcagcagttggtacagagtctgcagatgcagcagcagaagccccagccctcc
ctgctgcaggccttggatgccggcctggtggtacagttgcaagctttaacagctcagctc
accgctgcagccaccgccaacagcctcaacccccttgagcagagggtttcctcctttaat
aagaaacttttgggtccttttgactttgggaatgattctgaacgcagtgaagaacctaaa
aaagacacctcatcttctcagctgcccatggtgtccgagcccattaacagctcactcttt
catcaactggctgagcaactgcagcagcagaacctggaacagtttcagaagcagctgctg
gagcaccagcagaaggcaatgagcatagaaggccaggactcaatctttgggcaggaaaac
tctgttacagctgctcaaaacagcagccagccgcagcttcccgagccagagaataagata
gatgactccatagacaaccaacagcaggatatggacctggacgagggtcctgatggaatg
gaggaggagatttttgaaccagaggagaagaaaacgatcagcgcacggtccagaacacgc
tctaggtctcgctcaagatcacccaaacgaagaaggtccaggtcccgctctggctcacgg
aagcgtaagcatcgcaaacgatcgcgctcacgctccagagatcgcaagaggaagtcgtca
cggtcttactcgagtgaaaggcgtgccagagaacgagaaaaggagcgtcagaagaaagga
ttgcctcctatacgatccaagactctaagtgtgtgcagcacaactctgtgggtggggcag
gtggacaaaaaggccactcagcaggacctcacaaatctgttcgaagagtttggccagatt
gagtccatcaatatgatccctccccgaggctgtgcctacatctgtatggtccacagacag
gatgcataccgtgccctccagaagcttagtactggctcttttaagattggatccaagatc
atcaagattgcatgggctctgaacaaaggtgtaaagcaagagtacaagcagttttgggac
gcagacctgggtgtcacctacataccatgggagaaggtcaaagtagatgacctggatggc
tttgctgaagggggaatcattgaccaggaaacagtcaatgatgagtgggaaatggctaag
agttctgaaacagccaaggaaatgacaagccagccagtaagcactgaggctaccgtggtg
tccaatacccagactgagaccttcagccagcaggttgccatgatgcctgttcagctacca
gtggcccaggcggttcccagtgtaggtttggtgcctcctacctttcctgtctcgatgagc
atacctccaccaggctatgggccaccaccaccgttcataaggcctacctttaatgccaca
cagcctccgccaggctttttgcaggcccaacacacagcaggaatggcctcagcaactaca
ttgcagccatctgtgtccagcagccaagaagctgtcaaagagtcaccgttcagcactatg
atccctccaaccagcactatccctggcagcttcatgccctcggccatccctggaccgggt
atttttcccccagtgggagtccaaacacagcaggctaacaatgagaaaattccacagtct
gcagagggtatgggtgctgcagcagagctcacactacaaggcatgcagaatgctgtccgt
agtgggataggtctacttggcatgcaccctacagcttccctcacccatccgctgcatcag
tctgggttgagtggtcagagaatgcctgggttgttgcccctggatgtgcgacctaatctc
cttcaaccaggggctgctgcccgcttcccactcctgatgcagcagggtcctgctcagcaa
gcagctggccttcttgacagttccctccaggctcaggcacgacccagggctccctttcct
catatggacctcttcaacaggccccccaaccttaccagtgaaactgtatccaaaacagaa
gatgagtcctcctctggagctgatgagggcaaagaccaagactaccgcttcccacctata
gaaaagcagagtacaggcctgctgcggacccctccaccagagcacagggagcctcttgga
ggtggtggaggtccaggaggaggaggaaggcctcctttgcttcagaccccaggaactcag
ccagtcagatccagtttggtgggacgtttgcaggctcttgcaggcttcactcctgataac
cgctggaaccaaaccaaaggggactttgatgaacgagatggcatgcgaggaggcccacag
gccccaggtggtccaaaaggttttcaggaagaacgcccaacatcggggcagagcttcccc
aatcgatttgacaaccgtcctggagcaacaggtggagctggacctgttgggggtccacag
ccctggaatcgtggcggtggtcctacagctccttttagcagtgaacttcataaagaccta
gatgaccgaaggcgtccgtgggagagacaacgggacagagatgaaagagatgttgacttc
aggagagacatgaatggtaaccgccacagccgtgagagagagcgagagagagagcgagag
agagacagggaccgaggacgggagcgcaccagagaacatgagcgcgatcgagatggtgac
aaagagaaggagcgtgagcgtggaggctggacacctcttcttcctctacctacaccactt
cttcccactcctcctcttaatcccaacttgacgctgaatcaaggcaaacttcttgttcct
ctcaaattaaacccccaggttcagccacgattccagtctccacttttccctcaaagtcag
gccaaacctcctctcctgggtctgaaacagccactcccccaagctcagattaggtctcct
cccccgttacagaaccaagcacctgttcctgagcctcagtctgaaaccccagatcctgct
aaaacacctcaggcacagtcagctggttctccccacccatcatctgacagtcagggtcag
agtacattaactgatcctcttactcagcctgagccatcaccacaaccagaaaccccagca
caaatggaatccccccctcagaccacttcctctccaaacactaagaccccaatccttcac
tcacctttggccttcacacaagctgatagcccccctgaggatcccactcccactgtggag
aagcaggaagagccacagaatgatgaggaggggtcacaagaagagagattctgtgtcccg
caacctgagtgggtcaatgggcccgagaaggaccatgtcaatgtggctgagcccacacca
gaccccgaacatcattctttcctctctgaaagtgaaactgagccgaagcaggagcaagta
tcatctgctaaggacctaaacaatgaacagaaggagcccatggaggaagctccaagtcag
ccagtggtagacactgtcacagacactgaggggacataa
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