Kryptolebias marmoratus (mangrove rivulus): 108234789
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Entry
108234789 CDS
T05608
Symbol
ddb1
Name
(RefSeq) DNA damage-binding protein 1
KO
K10610
DNA damage-binding protein 1
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr03420
Nucleotide excision repair
kmr04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
108234789 (ddb1)
09124 Replication and repair
03420 Nucleotide excision repair
108234789 (ddb1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
kmr04121
]
108234789 (ddb1)
03400 DNA repair and recombination proteins [BR:
kmr03400
]
108234789 (ddb1)
Ubiquitin system [BR:
kmr04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
108234789 (ddb1)
DNA repair and recombination proteins [BR:
kmr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
108234789 (ddb1)
TCR (transcription coupled repair) factors
Cul4-CSA complex
108234789 (ddb1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_RSE1_1st
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
108234789
NCBI-ProteinID:
XP_017269738
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All DBs
Position
LG15:complement(24754366..24812986)
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AA seq
1140 aa
AA seq
DB search
MSYNYVVTAQKPTAVNACITGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGK
IAVMELFRPKGESKDLLFILTSKYNACILEYKQNGESIDIITRAHGNVQDRIGRPSETGI
IGIVDPECRMIGLRLYDGLFKVIPLDRDNRELKAFNIRLEELQVIDVHFLYGCQAPTVCF
IYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIPVPEPFGGAIIIGQESITYH
NGDKYLAIAPPTIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEELIDGTMALKDL
HVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVTVMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSEAGRE
TDDMLVLSFVGQTRVLMLSGEEVEETELPGFVDNQQTFYCGNVAHQQLIQITSGSVRLVL
QDSKALVSEWKEPQWKNISVAACNHTQVVLAVGRALYYLQILAGELKQISTTEMEHEVAC
LDITPLGEGGGESQLCAVGLWTDISARVLKLPCFTPLHKEMLGGEIIPRSILMTTFEGSY
YLLCALGDGALFYFGLDLQTGALSERKKVTLGTQPTVLRTFRSLSTSNVFACSDRPTVIY
SSNHKLVFSNVNLKEVNYMCPLNSEGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES
PRRICYQEVSQCFGVLSNRVEIQDVSGTTSAVRPSASTQALSSSVSSSKLFPSSTSPHET
SFGEEVEVHSLLVVDQHTFEVLHAHQFLPSEYALSIVSCRLGKDPSVYFIVGTAMVYPEE
AEPKQGRIIVFHYTDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTAEKELR
TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL
DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGVFHLGEFVNVFCHGSLVLQNLVES
STPTQGSVLFGTVNGMIGLVTSLSEGWYSLLLDLQNRLTKVIKSVGKIEHSFWRSFHTER
KTEQATGFIDGDLIESFLDLSRAKMQEVVSTLQVDDGSGMKREATVDEVIKIVEELTRIH
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtacaactacgtggtgaccgcgcagaaacccacggcggtaaacgcgtgcatcaca
ggtcactttacttctgctgaagacctcaacctgctcatagccaagaacacacgtttggag
atctatgtggtcacggcggaggggctgaggcccgtcaaggaggtcggcatgtacggcaaa
atcgctgtcatggagcttttccggcccaagggcgagagcaaggacctgctgttcatactc
acatccaaatacaacgcctgcatccttgaatacaaacagaacggagaaagcattgacatc
atcacgcgcgcccatggcaacgtccaggatcgcattgggcgcccatcagagacgggcatt
attggaatcgttgacccagagtgtcgcatgattggtctgaggttgtacgacggcctgttc
aaggtgatcccattggaccgggacaaccgcgagctcaaggcttttaatatccggctggag
gagctgcaagtcattgatgttcacttcctgtatggctgccaggcaccgacagtctgcttc
atctatcaggaccctcaaggacgccacgtgaagacctacgaggtctccctgagggagaaa
gagttcaacaaaggcccctggaaacaggagaacgtggaagctgaagcatccatggtgatc
ccagttccagagccatttggtggagctataatcataggacaggagtctatcacctaccac
aatggggacaaatacctggccattgcaccacccactatcaagcaaagcacgattgtctgc
cacaaccgcgtggaccccaacggttcacgctacctgctgggcgacatggagggccgcctc
ttcatgctgctgctggagaaagaggagctcatagacggcaccatggcgctcaaagacctg
cacgtggagctgctgggagagacgtcgattgctgagtgtttgacctacttggacaatggt
gtggtgtttgtgggctccagactgggagactcccagctcgtaaagctcaacgtggacagc
aacgagcagggctcatacgtaacagtaatggagacgttcaccaatctggggcccattgtg
gacatgtgtgtggtggacctggagaggcagggccagggccagctggtgacgtgctcaggt
gcattcaaagaaggctcgcttcggatcatccggaacggcatcgggattcacgagcacgcc
agcatcgacctaccaggaatcaaaggtttgtggccgcttcgctccgaggccggcagggag
acggatgatatgctggtactgtccttcgtgggtcagacacgagtgttgatgctgagcggc
gaggaggttgaggaaactgagctgccgggctttgtggacaaccagcaaacattttactgc
ggaaacgtcgcacatcagcagcttattcaaatcacatcaggctctgtgcgcctggtgctc
caggacagcaaggcgctggtgagcgagtggaaggagccgcagtggaagaacatcagcgtg
gctgcctgcaaccacacgcaggtggtgctcgccgtgggccgggccctgtactacctgcag
atcttagccggcgagctcaaacagatcagcaccaccgagatggagcacgaggtggcctgc
ttggacatcacgcctctgggggagggcggaggcgagtcgcagctctgcgccgtgggcctg
tggactgacatctcggcgcgtgtcctcaaactgccctgcttcaccccgctgcacaaggaa
atgctgggcggagaaatcatccctcgctccatcctaatgaccacctttgaaggcagctac
tacctgctgtgtgccctcggagatggagctctcttctacttcggtctggacctgcagacc
ggtgccctcagcgagcgcaagaaggtcaccctgggcacgcagcccaccgtgctgaggacc
ttcagatccctctccacgtcgaacgtcttcgcctgctccgaccgacccactgtcatctac
tcctccaaccacaagctggtgttttccaacgtcaacctcaaggaggtcaattacatgtgc
ccgctcaactccgagggctaccccgacagtctggctctggccaacaacagcaccctgact
attggaaccattgatgaaatccagaagctccacatccgcacagttccactctatgagtct
ccgagacggatctgttaccaggaggtttcccagtgttttggggttttgtccaacagggtg
gagattcaggatgtgagtggcaccacctctgccgtacgacccagtgccagcactcaggcg
ctctccagcagcgtgagctccagcaagctgttccccagcagcacttctccacatgagacc
tcctttggtgaggaggtggaggttcacagtctgctagtcgtggatcaacacacctttgaa
gttcttcatgctcatcagttccttcccagcgagtatgccctcagcattgtgtcatgtcgt
ctgggtaaagacccatctgtgtatttcatcgttggcaccgccatggtgtacccagaagag
gcagagcccaagcagggacgaattattgtcttccattacactgacggtaagctgcaaact
gtggctgagaaagaggtgaaaggagccgtctattctatggtggagttcaacggcaaacta
ctggccagcataaatagcacagtgcgcttgtatgagtggacggctgagaaggagctgagg
accgagtgtaaccactacaacaacatcatggccctttacctgaagaccaaaggagatttc
atcctggtgggagacctgatgaggtctgtcctgctgctggcgtacaaacccatggagggc
aactttgaagagattgctcgtgattttaaccccaactggatgagcgccgtggaaattctc
gacgacgacaacttcctgggggcagagaacgcctttaacttgtttgtctgccaaaaggac
agtgcggccaccaccgacgaggagaggcagcacctgcaggaggtgggggtgttccacctc
ggcgagtttgtgaatgttttctgccatggctcgctggtgctgcagaacctcgtggagagc
tccacgcccacccagggctccgtgctcttcggcaccgtcaacgggatgatcggtctggtg
acgtccctgtccgagggctggtacagcctcctgctcgacctacagaaccgcctcaccaag
gtcatcaagagcgtggggaagatcgagcacagcttctggaggtccttccacacggagcgt
aagacagagcaggccacgggattcatcgatggggacctgattgaaagcttcctggatctc
agccgagcaaagatgcaggaggtcgtcagcactctgcaggtcgatgacggcagcggcatg
aagcgtgaagccacagtggacgaggtgattaagattgtggaggagctgacgaggatccac
tag
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integrated database retrieval system
