Kryptolebias marmoratus (mangrove rivulus): 108234861
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Entry
108234861 CDS
T05608
Name
(RefSeq) collagen alpha-1(XXV) chain isoform X1
KO
K24356
collagen type XXV alpha
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
kmr00536
]
108234861
Glycosaminoglycan binding proteins [BR:
kmr00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
108234861
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
108234861
NCBI-ProteinID:
XP_017269894
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Position
LG7:complement(6762135..6938832)
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AA seq
685 aa
AA seq
DB search
MEKDASPLRRASKRATRSGALSAISSLCSLASIAFCVHLSLSAADIRSRVAELESGPPGP
GPGPVPGAQAELSALVRQRVEELLAQNSYQNLVKIRTARQASPDCSCPPGPPGKRGRRGR
DGEPGPPGPPGPKGDKGDQGDQGPRMVFPKINHGFLSADQQLIKRRLIKGDQGQAGPPGP
PGPPGPPGPRGPPGDTGKDGPRGLPGVPGDPGQSGETGPMGPEGPQGPKGSLGPPGVPGV
DGLKGDVGIPGLDGIPGTKGEKGDMGEKGDMGEDGPKGDMGEKGDAGSSAAGIKGEPGEP
GRSGQKGEPGLPGLPGLPGIKGEPGFLGPQGEPGLPGLPGTKGERGDHGPPGKGERGETG
PAGPKGSQGEAGLPGSKGSKGETGDKGDLGSVGPKGPPGQKGDRGATEIIDYNGNIEEAL
QKITTITVTGPPGPPGPIGPQGIKGDRGLPGLPGLDGERGYKGSKGDMGMPGASGDKGAT
GLPGLPGGNGAKGDKGDAGLSGPQGPSIVGPPGPPGPHGAPGPMGPHGFPGAKGEPGLHG
MKGMRGEPGHKGDRGPLGLPGASGLDGKPGIRGMDGPPGPAGPAGPKGDIGERGAPGEPG
PRGPYGLPGAAGTPGLDGLPGLKGDKGDDGERGEKGEKGKKGKKGPKGEKGEQGAPGLDA
PCPLGPDGLPMPGCWQKGVTPWLVA
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atggagaaagacgcgtcgcctctgaggagagcgagcaaaagggcgacgaggagcggagcc
ctgagcgccatctcgtccctctgctcgctggcgtccatcgccttctgcgtccatctgagc
ctcagcgccgccgacatccggagccgcgtggccgagctggagagcggcccccccggaccc
ggacccggacccgtacccggagcccaagcggagctgagcgcgctggtccggcagagggtg
gaggagctgctggctcagaactcctaccagaacttggtgaagatccggaccgcgagacaa
gcctcacctgactgtagctgtcctccaggacctcccgggaagcgaggaagaagaggccgc
gatggggaacctggacctcctggccctccaggtccgaagggtgataagggggatcaaggt
gaccagggacctcggatggtcttcccaaagatcaatcatggctttctttccgctgaccag
cagctcataaagcggcggctcattaagggcgatcagggccaagccggaccaccggggcct
ccggggccgcctggccctcccggacccaggggcccgccgggggacaccgggaaagacgga
cccagaggtctgccaggcgtacccggtgatccagggcagtcaggagaaacgggacccatg
ggtcctgaggggccacaagggccaaagggatcgctggggcctcccggagttccaggcgtc
gacggactgaagggggatgttggcatcccgggattggacggtattccagggaccaagggc
gaaaagggagacatgggtgaaaagggcgatatgggcgaggacggacccaaaggtgacatg
ggggagaagggagacgctggctcctctgcagcaggcatcaagggcgaacccggagaaccc
ggccggagtggacagaagggagaaccaggactaccagggctgcctggactcccagggata
aagggcgagcctggatttttgggcccccagggagaaccgggccttccgggactcccagga
accaagggtgagaggggcgaccacgggccacctggaaagggggagcggggagaaaccgga
cctgctgggccgaagggttcacaaggagaggcgggtctacctggctccaaagggtcaaag
ggggagactggagataaaggagatctgggatccgtcggcccgaagggcccgcccggccag
aaaggcgaccggggagcgacggagatcatcgactacaacgggaacatcgaggaggcctta
cagaagatcaccactattaccgtgacgggtcctcctggcccacctggaccgattggaccg
cagggaataaagggggatcgtggtttgcctggtctccctggactcgatggagaaagaggc
tataaaggttccaagggagacatgggcatgcccggggcctctggagacaaaggagccact
ggtttacctggtttacctggtggcaacggggcaaagggagataaaggagatgcaggactt
tccggcccacagggtccatctatcgtcggccctccggggccaccaggaccccacggggcc
ccgggtccgatgggacctcatggctttcctggagcaaagggagagcctggtttgcacggt
atgaagggcatgagaggggaaccgggacacaaaggggaccgtggaccattgggcctccct
ggagcctccggcttggacggcaagcccggaattaggggcatggatggacctccgggtcca
gctggaccggctggaccgaagggtgacataggggaaagaggagcgccgggcgaaccagga
ccgcgaggaccttatggactaccgggagcagctggaacaccaggactggatgggttgcca
ggcttaaagggagataaaggcgacgatggggaaagaggagaaaagggggagaagggaaag
aagggcaaaaaagggcctaagggcgagaaaggagaacagggtgctcctggattagatgca
ccttgcccattgggcccagatggattaccgatgcctggctgctggcagaagggagtcaca
ccgtggctggtagcctga
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