Kryptolebias marmoratus (mangrove rivulus): 108235007
Help
Entry
108235007 CDS
T05608
Symbol
hnf1a
Name
(RefSeq) hepatocyte nuclear factor 1-alpha
KO
K08036
transcription factor 1, hepatocyte nuclear factor 1-alpha
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
kmr03000
]
108235007 (hnf1a)
Transcription factors [BR:
kmr03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain POU
108235007 (hnf1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HNF-1B_C
HNF-1_N
HNF-1A_C
Homeodomain
Telethonin
HTH_37
HTH_5
Homeobox_KN
Motif
Other DBs
NCBI-GeneID:
108235007
NCBI-ProteinID:
XP_017270192
UniProt:
A0A3Q3AFP1
LinkDB
All DBs
Position
LG1:complement(10715410..10721627)
Genome browser
AA seq
560 aa
AA seq
DB search
MEGEEKARAAKARPSRLTALQEQLIWALLESGLSRDVLVQAMGELERGKTSAGAERGEKG
DGESSEEGEMDFSPPIFRELDKLPPDEASKLRAEVDRLLQEDPWHVAKMVKSYMQQHNLP
QREVVESTGLNQSHLSQHLNKGTPMKNQKRAALYTWYVKKQCEISQQFTNAKHGLAPAEE
QGEDTKKGRRNRFKWGPASLQILFNAYERQKNPSKEEREGLVEECNRAECLQRGVSPSQL
AGLGSNLVTEVRVYNWFANRRKEEAFRHKLALDTSFTSQSASSSNPALPPSPEHGVKYSQ
QISCDAVGSARNSAGERVGRLVVSPIQLEPSHTLLETHNPKLVSSNGPLPPVSTLTSLHS
LSASPASSQSLIMASVPSVMSLGESSLLIGLASTQPQTVPVINNMGGFTTLQPISFQQQL
HGSHQQPLSQQLQGHMAANPFMATMAQLPCHMYKSDSPQYHSSSLLSQAMVIADGSSLGT
LTSLAAVRQILTTDPEDGTDSPLQEDSLHLQPHTPVPASSESLELYPSSQMAERHQSHIL
SPSPTDISSYMPTQMVSTAQ
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atggagggagaggagaaggcgagggcggcgaaagccaggccgagtcgtctgaccgccctc
caggagcagctcatctgggccctgctggagtccggactgtcccgggacgtcctggtccaa
gccatgggggaactggagcggggcaagaccagcgccggggctgagaggggagagaagggg
gacggagagagctccgaggagggagaaatggatttctcgccgccgatattccgagagctg
gacaagctccctccggacgaggcgtccaaactcagggctgaggtcgaccggttactgcag
gaggacccctggcatgttgcaaaaatggtgaaaagctacatgcagcagcacaacctacct
cagagggaggtggtggagtccacgggactcaaccagtcccacctctcccagcacctcaac
aagggaacacccatgaagaaccaaaagagagctgctctgtacacctggtacgtcaagaag
cagtgcgagatcagccagcagttcaccaacgccaaacacggccttgcacctgcagaggag
caaggagaggacaccaagaagggacggaggaacaggttcaagtggggtccagcatccctg
cagatcctcttcaatgcctacgaacgacagaagaaccccagcaaggaggaaagagagggg
ctggtggaggagtgcaacagggcggagtgtctccagaggggggtgtctccctcccagctt
gctggcctgggctccaacctggtcaccgaggttcgagtgtacaactggttcgccaaccgc
cgcaaagaggaggccttccgtcacaagctggccctcgacacatctttcacctcccaatca
gcgtcctcctctaatcccgcccttccaccgagtccagagcatggtgtgaaatacagccag
cagatttcgtgcgacgcggtcggctcagctagaaacagcgccggagagcgagtggggcgt
cttgtggtcagtcctatccaactggaacccagccacacactcctcgagacccataacccg
aagctggtgtccagcaacggccccctgcccccagtaagcactctgacctccctgcacagt
ctgtccgcctcgcccgcctcctcgcagagcctcatcatggcttcagtgccaagtgtcatg
agcctaggagagtcctctcttctcattggattagcttccacgcagccgcagaccgtcccg
gtcataaacaacatgggaggtttcacaactctccagcccatctcgttccagcagcagctc
catggctcccaccagcagccgttatcacagcagcttcagggtcacatggctgccaacccc
ttcatggcaaccatggctcagctgccgtgtcacatgtacaagtcggactcgcctcagtac
cactcatccagtctgctgtctcaagccatggtcatcgctgacggcagcagtctggggacc
ctgaccagcctcgccgcggtcagacagattctcacgacagatcccgaggacgggacggac
tcgcctttacaggaagactcattacacctgcagccgcacacgcctgtgccagcttcttcc
gagagcctggagctgtatccttcctctcagatggcagagcgccatcaatcccacatcctc
tcaccttcaccgacagacattagctcctacatgccaacacaaatggtctccacagcgcag
tga
DBGET
integrated database retrieval system
