KEGG   Kryptolebias marmoratus (mangrove rivulus): 108235375
Entry
108235375         CDS       T05608                                 
Symbol
mdc1
Name
(RefSeq) mediator of DNA damage checkpoint protein 1 isoform X1
  KO
K20780  mediator of DNA damage checkpoint protein 1
Organism
kmr  Kryptolebias marmoratus (mangrove rivulus)
Brite
KEGG Orthology (KO) [BR:kmr00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:kmr03400]
    108235375 (mdc1)
DNA repair and recombination proteins [BR:kmr03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    108235375 (mdc1)
SSDB
Motif
Pfam: BRCT_2 RTT107_BRCT_5 FHA BRCT
Other DBs
NCBI-GeneID: 108235375
NCBI-ProteinID: XP_017270812
UniProt: A0A3Q3ALZ0
LinkDB
Position
LG16:complement(9350986..9363478)
AA seq 1989 aa
MDATQAISDSILESDEEENKEENQRKRGRPLAKLCILKNPHLPETELPLFLGDNVLGRDP
SICSLPLPASSVSKQHATICISVYKRRGCCSEVDMEALVWDLGSMNGTRKGRLKLTPNVR
YALGEGDSLVLADIPCQYVSCGSDSVSSHDVMRIPGSRNSRVKTGLPDAVGDTDTVGKKC
VNGGTKAKKTPDRGGCLSFEQTPTQPQGSLVPESDSDSEGERGGRGDRRQKTRVSDCDSH
KSSPSSSTFLSPPDKIVPESEDESLIATPSSSSSNRHVSFSTEKTDVDVERQHLEKNTSP
AFIENTEEDEERAARGGTTSKETGQDVKQKKNVSFTEEDESLVSTPGVSRGAIPALNMDS
DTDVEGEEGEGIPAGHLSLNTSQQADQPPNTVLFHMDSDTDVDEDEDISDKAPKPVPSSN
ETAEPSRVASGIQPEGITTDSDTDVDDDKVAVSEAIITTKATSFQTDSASSRDFRLDSDT
DVEEEGEAGSCTKSNNSKTDETLIKSDLKPDVSESVPAAAPDSKDESVGAPAVGGPSAAA
ALTESCTSEAAAADLDILSDSDTDMSEQEEPLLVVPQDVTNVSASSIKMSGSGVDTELEE
SRAGDGANPADLRGDSDTDVDDEKGEDQIPQLLRERSLGSPVPLLKNCSTPVQVSGAETS
ALRPAVLSCSDQGDEDYAEAETQYFVLQTRDPQTGADPNSASGLKSKADDRSSRGDSFQP
GLSDSSHLQCQDGALDTESTQAFVSVEGGVNLEETQAFISAADRTAAENDSNLEATQVYE
ENKEPGKNSEVPEKDGCVNLAFEATQAYISEQDSDEDKRPNAAVTETADITDFSSTLATA
ETQPVLPSEEEGSLETNNPICSVQVKPKIQNETKENNPSEAALITETQPMCTSDDKESDD
EDLSPQLEEEQTQPFTCSALSLAETQHMHVSVVETQPMVLDEDDDEHSMPLLPKRKAKQL
RIEEEESQQLTSSAACTAETQPVVASEDDDDDDSMPGPRKRKARLLQLEDETQSLGNSVE
SQPLVTCEGGQSDEENFSPCPRKRKAKPLQVEEAQTQPLISSEGSGFSPQPEGRGEDEEN
DSEVFVLPRQRKAKRLHLEDEETQQLTNSELSTAETQPTLEDEGDATASPQIEETLRHDE
EQAQPLTTAEVSAAETQLNEKSDSIPGPQKSTAKQHHPEEECSEPPKRQTRKERKTLTKT
RGRRGKAKSEDDNSEEEVKQTGEGIITRQREDEEEKSRSVGKKSLKKGQKEGKLEGDMGV
AKVRQEKEETKHEEMETDDGERQEEPGRRRRRGEKLQYEGKGKEEQGKLQMETAERIKPD
LESLERDRMKEKQNLKKEIEKKEQKEKERLEENLETAKKEQKERLEREEQQEHQTRLETE
KEAPEKQLRDKEEKQKVSARGRRSTRKTIAALCPEQNSAVSTSDDFPSSRTRSRSNSSNS
ISSERSASSVSTQESKGRGRGGKRSSETLQTPVIRSSRRRLTVAAAPTEPNSSCSFSSEI
SSCRSSQNRARGGRQHGSDCHDASSSETLHKNDTKGSSAQQAGTSRGQQRVNANESKPSV
LNEDGQSCQEKRSLNEKSPLPKRNVRVRGQKAVSTENVEEPVAPSVSEGDGGRNKRNTRK
SELETNTDMGTNKVSKEKGRVQKPAEEEGKGEQNDNIPAAVQVRRTGRSSSAQMKKNVKE
SLPEEELEDGDKKTVEAAEKKARGRTSVGQKNKNEELKESGTSASSTKLNAKEEASEPRT
PTSNASRKRQASSDSSPLAKTPRSSSGSPAARGRLRAGSQAYKVLFTGVVDEKGERVLTR
LGGSMAKGVLDMNCLVTDKVRRTVKFLCAVAKGIPVVTTDWLEKSGKAGSFLSPHAFLVK
DPEQEKKFSFCLQDSLNTAQSQPLLQGYQIHVTKSVKPEPVHMKEIICCSGAVFLTKMPS
SQKPRTVVITCEEDWRLCGPAVSASLPVVTAEFVLTGILQQKLDFETHALSPTANSQPAG
DRGRSRRKT
NT seq 5970 nt   +upstreamnt  +downstreamnt
atggatgccactcaggcgatcagtgactcaatcttagagtcagatgaggaagaaaacaaa
gaggagaatcaacgtaagagagggagaccattggctaaactttgcatcttaaaaaaccca
cacctccctgagacagagttgcccctctttttgggagataatgtgctgggccgtgacccc
agcatctgctcgctaccactgcctgcatcctctgtgtccaagcaacacgccaccatctgc
atctctgtttacaaaagaagaggctgctgcagtgaagtggacatggaggctttggtctgg
gacctagggagcatgaatgggacccgtaagggacggctaaagctgactcctaatgtccgc
tatgccctcggtgaaggcgacagcttggttctggcagacatcccctgtcagtacgtgagc
tgcggttcagattcagtctcttctcacgatgtcatgagaattccagggagcagaaattca
agagtgaagaccgggttgccagatgctgtcggagacactgacacggtcggtaagaaatgt
gtcaatggtggaacaaaagcgaagaagacccctgacagaggcggttgcctgtcttttgag
caaacgccaacccagcctcaggggagcttggtcccagaatctgactcagactcagagggt
gaacgagggggaagaggagacagaagacagaagacacgagtgtctgattgtgactctcat
aaatccagccccagctcttcaacatttttaagtcctccagacaaaatcgtccctgaaagt
gaggatgaaagtctcatcgcgacgccctcctcctctagctcaaacagacatgtcagtttc
agcacagaaaagacagatgttgatgtggagcgacagcatctggagaaaaacacgtcccct
gcgtttatagaaaacactgaggaggatgaagaaagagcagcacgaggagggacaacttct
aaagaaaccgggcaagatgtgaaacagaaaaagaatgtgagttttacagaagaagatgag
tcactcgtgtccacaccaggagtctcccgaggtgccatccctgcgcttaacatggacagt
gacacggatgtggagggagaggagggcgagggaatacccgctgggcatttgagcttaaat
actagtcaacaagctgatcaaccaccaaacacagtcctgtttcacatggacagtgataca
gatgtcgatgaagatgaagacatttcagacaaagctcctaaacctgtgccttcgtctaat
gaaactgccgaaccctctcgtgttgcgtcaggtattcagcctgaaggcatcaccacagac
agtgacactgatgtggatgatgataaggttgccgtgtcagaagctatcatcacaaccaaa
gccacatcatttcagaccgactctgcttcctcaagagatttccgcttagacagtgacaca
gatgttgaggaggaaggtgaggctggaagttgtacaaaaagcaacaattctaaaacggat
gaaacgctcatcaaatctgatttaaagcccgatgtgtctgaatctgttcctgctgctgct
ccagactcaaaggatgaatctgtcggtgctcctgcagtcggcggcccctcagcggcggca
gctctgacagaatcctgcacctctgaagctgcagccgctgatctggacattctgtctgac
agtgacacagacatgtcggagcaggaggagcctcttctggttgtacctcaggatgtcaca
aatgtgtcggcatcttctattaaaatgtcaggatctggtgtggacacagagttggaggag
tcccgtgctggagacggggccaacccagctgacctaagaggggacagcgatactgatgtg
gatgatgagaaaggtgaggaccagatccctcagctgctgagagaacgtagtttggggtct
ccagttccccttctgaagaactgctctactcctgttcaggtttcaggtgctgaaacatct
gctttaagacccgcagtgctgtcctgctcagaccagggggatgaagactatgctgaggcc
gagacacagtactttgtccttcagaccagagatccgcagacaggcgcggacccaaactca
gcatcgggacttaagtccaaagcagatgaccggtccagcagaggagattccttccagcca
ggcttgtctgacagcagccacctgcagtgtcaggatggggctctggacacagagagcacc
caagcttttgtgtcagtggaaggaggggtgaacctggaggagacccaggctttcatctca
gctgctgaccgaacggctgcagagaacgactccaacctggaggccacgcaggtctacgag
gagaacaaggagcctggtaaaaattcagaagtgcctgaaaaagatggttgtgttaatttg
gcctttgaagcaactcaggcttatatttcagagcaagattcagatgaagataagagacca
aacgcagcagtgactgagactgcagacattacagacttctcatctacactcgctacggct
gaaacccaacctgtgctgccttctgaggaagaaggcagcttggaaacaaataatccaatt
tgttctgtacaggttaaacccaaaatacagaatgaaacaaaggaaaataacccctctgaa
gctgctcttataactgaaactcaacctatgtgtacaagtgatgacaaggaaagtgacgat
gaagacttatcaccgcagcttgaagaggagcaaactcagccttttacttgttcagcgttg
tcattggctgaaacccagcacatgcatgtcagtgttgttgaaactcagccaatggttcta
gatgaagacgatgacgagcactcaatgccactcctgccaaaaagaaaagcaaagcagctt
cgtattgaagaagaggagtcccaacagctgacaagttctgctgcctgcactgctgaaacc
caacccgttgttgcaagcgaggatgatgatgacgatgattcaatgccaggcccacgcaaa
agaaaagcaaggctgctgcagctggaagacgaaacacagtcactgggtaattctgttgaa
tcccaacccttagtgacatgtgagggtgggcagagcgatgaagaaaacttcagtccctgt
cctcggaagagaaaagcaaagcccctgcaggtggaagaggcgcagactcagcctctgatc
agttctgaaggctctgggttttcacctcagccagaaggcagaggtgaagacgaggagaac
gatagtgaggtcttcgttcttccacgacaaagaaaagcaaaacggcttcatcttgaagac
gaggagacgcaacagcttacaaattctgaactctctacagctgaaacccaacctacactt
gaagatgaaggagacgcaactgcaagtccacaaatagaagagacattacgtcacgatgaa
gagcaggcgcaacctcttactactgcggaggtttctgctgctgaaacgcagctaaacgag
aagagtgactcgattccaggtccacaaaaaagtacagcaaagcagcaccatcctgaggaa
gagtgttctgaacctccaaagagacaaacaagaaaggaacgtaagactctgacaaaaacc
agaggaaggagaggaaaagcaaagtcagaggatgataacagcgaagaagaagtaaagcag
acaggagaggggattattacaaggcaacgagaagatgaagaggagaagagcaggagcgtt
gggaaaaaaagtctgaaaaagggacagaaagaggggaaactggagggagacatgggagtt
gcaaaggttagacaagaaaaagaagaaactaagcatgaagagatggagaccgatgatgga
gaaagacaagaggagccggggaggcggcgaaggaggggagaaaaactacagtatgaagga
aaaggtaaagaagaacaaggaaagctgcagatggaaactgcagagagaataaaacctgat
ctagagagcttagaaagggacaggatgaaagaaaaacaaaacttaaagaaagaaattgaa
aagaaagaacaaaaggagaaagagagattagaagaaaacttggaaacggcaaagaaggaa
caaaaagagagacttgagagggaggagcagcaggaacaccagacaagactggagacagaa
aaggaagctccagaaaagcaactgagggacaaagaagagaagcaaaaagtttctgcaaga
ggtcgaaggtcaacgaggaaaacaattgctgctctgtgccccgagcaaaactcagccgtt
tcaacgagcgacgatttcccatcgagtagaacccggtcccgctccaactcgtccaactcc
atcagctcagagaggtctgcttccagtgtcagcacccaggagagtaaaggaagagggaga
ggaggaaagaggagcagcgagacgctccagacgcccgttatcagaagcagccgtcggagg
ctgactgtggctgcggcgccaacggagccgaactcatcctgctccttcagctccgagatc
tccagctgcaggagctctcagaacagagccagggggggtcggcagcacggatctgattgc
cacgatgcatcctcatctgaaactctgcataaaaatgataccaaagggtcaagcgctcaa
caggctggtaccagtagggggcagcagagggtcaatgcaaatgaatcaaaaccttcagtt
ttaaatgaggatggccagtcatgccaggaaaagagaagtctgaatgaaaaatcacctctg
cctaaaagaaatgtcagggtcagaggccaaaaagctgtaagtactgaaaatgtggaggaa
cctgtggctccgtctgtcagtgaaggtgatggaggcagaaacaagagaaacacaaggaag
agtgagctggagacaaatacagacatgggtactaacaaggtttccaaagagaaaggcaga
gtgcaaaaaccagcagaagaagaagggaaaggtgagcaaaatgataacattcctgcagct
gtccaggtgaggagaacaggtagatcttccagcgctcaaatgaagaagaacgtaaaagag
tctcttcctgaggaggagctggaggacggtgacaaaaagacggtggaggctgccgagaag
aaagccagaggtcggacatcagtggggcagaaaaataaaaatgaggagctgaaggaaagc
ggaacatctgcatcttccacaaaactgaatgcaaaggaggaagcatcagagcctcgaaca
ccaaccagtaatgcttcccggaagcgacaggcctcctcagactcgtctccgttggcaaag
actcctcgctcctcttctggctccccagcagcgaggggtcgacttcgagctgggagccaa
gcctacaaggtgctgttcacaggcgttgtggatgaaaaaggggagcgagtgttgactcga
ttaggaggcagcatggctaaaggagtgctagacatgaactgtcttgtgacggataaagtg
cgaaggacggttaaattcctgtgtgctgtggccaaaggtatcccagtcgtcaccacggac
tggctggaaaagagtggtaaagccggaagcttcctttctcctcatgcttttcttgtgaag
gacccggagcaggagaagaagttcagcttctgcctgcaggactctctgaacacggcccag
agtcagcctctcctgcagggatatcagatccatgtcacgaagtcggtaaagccggagcca
gttcacatgaaagaaataatttgctgcagcggagccgtctttctgacgaagatgccctcg
tctcagaagcctcgaactgtagtgattacctgcgaggaggactggcgactgtgtggccct
gccgtgtctgcgtcgctccccgtcgtcactgccgagtttgttctcacagggatcctgcag
cagaaacttgattttgagacccacgcactttctcctacggctaactcccaacctgcaggg
gacagaggaagatccaggaggaagacttag

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