Kryptolebias marmoratus (mangrove rivulus): 108235520
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Entry
108235520 CDS
T05608
Symbol
cnot3a
Name
(RefSeq) CCR4-NOT transcription complex subunit 3a isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108235520 (cnot3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kmr03019
]
108235520 (cnot3a)
Messenger RNA biogenesis [BR:
kmr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108235520 (cnot3a)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
108235520 (cnot3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
108235520
NCBI-ProteinID:
XP_017271078
UniProt:
A0A3Q2ZRH1
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Position
LG16:complement(10843908..10851804)
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AA seq
914 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVAEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLVENRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQRE
KEETGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKEKQDRIDELKRLIERHRFHI
RMLETILRMLDNDSVPVDAIQKIKDDVEYYIDSSQDPDFEENEFLYDDLDLEDIPAALVA
TSPSGQGNMEDDVYLHSSSTPTSTTSSSPIPPSPATCTAENSEDDKKRGRSTDSEVSQSP
VKNGAPSLQSSFSSSTTSGSSSSSSLVSMASVVGGIPAVPTSSTLIGSFSSAVQQHQHQS
AQQQQQSQQSNQPQQQQQQQQQQPPQTKPSVSSNNTPSPPSNPLLPTSNAPSLTTPSTPS
SSAPNSQSQPPSGPTSASSLGLGLDLRKGGITGTSSANQMPSLGLTGHTTPLNTMAGLIS
GSTSALYAHAAASGGLGLSSTTQSSILTESSSSIPTSGCSGVTTNGAGSGLNLLGSSPAH
NSLSGSILSLVPGQGVAPATSQVPPTSASTTAGVVGLMVGNGGSVGVVGAVGMNAAPARP
PSGLKQNGSTSYSAVVAESSTESALSTPNQSQNSQPSSLSSSTSQPMDNGPSLISSITLP
PSSPSPSFSDSTPSGGSLLNGPHSYPQASEGLEAPKGLSSLKVMAERAALGSGLDGEIPN
LHVTDRGLNDIFSGSSAAPGTPAAPQSSVSEVSIPPSLGVCPLGPTPLPKEQLYQQAMQE
SAWNHMPHPSDSERIRQYLMRNPCPTLPYHHQVPTHHSDTIEFYQRLSTETLFFIFYYLE
GTKAQYLSAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTYIYFDYEKWGQRKKEG
FTFEYRYLEDRDLQ
NT seq
2745 nt
NT seq
+upstream
nt +downstream
nt
atggctgacaagagaaaactacaaggtgaaattgatagatgtttgaaaaaagtagcggag
ggcgtagagcagtttgaagatatttggcaaaagctccacaatgcagccaacgcgaaccag
aaggaaaaatacgaggctgacctcaagaaagagataaaaaagctacaacgattgagagat
cagattaaaacatgggtggcctcgaacgagatcaaagacaaacggcagctagtcgagaac
cgcaaacttatagagacgcaaatggaacggttcaaagtggtggagcgagaaacaaaaaca
aaagcgtactctaaagaaggcttggggcttgctcagaaggtggatccagctcagagggaa
aaggaagaaacgggacagtggctaacaaatacaatagacacactaaatatgcaggtggat
cagtttgagagtgaggtggaatctctttcagtccagacacggaaaaagaaaggcgacaag
gagaaacaagatcgcatcgatgagctcaagcggctgatcgagaggcacagattccacatt
cgcatgttggagaccattttacgaatgctggacaacgattctgtgccggtggacgcaatc
cagaagatcaaggacgacgtcgagtactacatcgactcctctcaagacccggactttgag
gagaacgagttcctgtatgacgacttagacctggaagacatccctgcagcgttagttgcg
acttctccgtcgggtcagggcaacatggaagatgacgtgtatctccattcgagcagcact
cccacctccaccacatcttcttcacccatccctccatccccagccacttgcactgctgag
aactcagaggacgataagaaaaggggacgatcgacagacagtgaagttagtcagtcgccc
gtgaagaacggtgccccatccttacaatcttccttctcttcttccaccacctctgggtct
tcttcgtcctcttccctcgtgtctatggcgagtgttgttggaggcattcccgcggttccc
acgagcagtactctcataggaagcttcagcagcgcggtacagcagcatcagcatcagtct
gcgcagcagcagcagcagtctcagcaatcaaaccaaccgcagcagcagcagcagcagcag
caacagcagccacctcagactaaaccctctgtttcctcgaacaacacccccagcccaccc
agcaaccctcttctcccaacgtccaacgccccttctttaaccacgcccagcacgcccagt
tcatcagctcccaactctcagtctcagcccccctctgggcccacctctgcatccagtttg
gggctggggctggatttaagaaaaggtggcataacagggaccagcagtgccaaccaaatg
ccaagtttaggtttgaccggccacaccactcctttaaacacaatggcaggcctcatttca
gggtccacatctgccctttacgctcacgcagcggcatctggaggactgggcctgagcagc
accactcagtccagcattttgacagagagcagcagttccatccccacctcgggatgcagt
ggagtcaccaccaacggagcagggtcgggccttaacttgctaggttccagcccggcccac
aattctctgagtgggagtattttgagtctggtccccgggcagggcgtggcccctgccacc
tctcaggtgcccccgacttctgccagtaccacagccggagtagttggcttgatggttggc
aatggaggaagcgttggtgtggttggagcggtcggcatgaacgccgctcctgctagacca
ccaagtgggctgaagcagaatggaagcacaagttacagtgctgtggtggcagagagctcc
acagaatcagctctgagcacaccgaaccagtcacagaacagccaaccctcatctctcagt
tcctcaactagccagccgatggacaatggccccagcttaatcagctccatcaccctgccc
cccagttctccatccccctcgttctcggacagcacgcccagcggagggagccttctgaac
gggcctcactcttatccacaggcctccgagggcctcgaggctcctaaaggcctcagttcc
ctgaaggtgatggctgagagagcggcgcttggatcgggtctagatggggagattcccaac
ctccacgtgaccgacagaggtctgaacgatatcttctctggttcgtcagcggcgcccggt
acgcccgctgcccctcagtcgtccgtgtcggaggtcagcatccctccctcgcttggggtc
tgcccgctgggtccgacccccctccccaaagagcagctctaccagcaggctatgcaggag
tccgcgtggaaccacatgccacacccgtctgactccgagaggatcaggcaatacctgatg
aggaatccatgtcccaccttgccgtaccaccatcaggtaccgacccaccactctgacacc
atcgagttctaccagaggctgtccacagaaacgctcttcttcatcttctactacctggag
ggcaccaaggcccagtatctgtctgccaaggctctgaagaaacaatcatggaggtttcac
accaagtacatgatgtggtttcagaggcacgaggagcccaagactatcactgatgagttc
gaacagggcacttacatttactttgactatgagaaatggggccagaggaagaaggagggg
ttcaccttcgagtacaggtacctcgaagacagagacttgcagtga
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