Kryptolebias marmoratus (mangrove rivulus): 108235930
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Entry
108235930 CDS
T05608
Symbol
ddx6
Name
(RefSeq) probable ATP-dependent RNA helicase DDX6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108235930 (ddx6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kmr03019
]
108235930 (ddx6)
03036 Chromosome and associated proteins [BR:
kmr03036
]
108235930 (ddx6)
Enzymes [BR:
kmr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108235930 (ddx6)
Messenger RNA biogenesis [BR:
kmr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
108235930 (ddx6)
mRNA degradation factors
5'-3' decay
Decapping complex
108235930 (ddx6)
Chromosome and associated proteins [BR:
kmr03036
]
Eukaryotic type
Gene silencing
piRNA pathway
108235930 (ddx6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
ResIII
SNF2-rel_dom
AAA
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
108235930
NCBI-ProteinID:
XP_017271755
UniProt:
A0A3Q2ZM17
LinkDB
All DBs
Position
LG2:3480518..3487701
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AA seq
480 aa
AA seq
DB search
MSTTRTENPVILGLSNQNGQLRGSVKPAGAPGGGGGGPQQQMNQMKGTINGSSQPAPQTN
AVIKPGDDWKKNLKLPPKDMRIRTSDVTATKGNEFEDYCLKRELLMGIFEMGWEKPSPIQ
EESIPIALSGRDILARAKNGTGKSGAYLIPLLERIDLKKDCLQALVIVPTRELALQVSQI
CIQVSKHMGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVNQVQMI
VLDEADKLLSQDFVVMMEEMLGFLSKQRQILLYSATFPLSVQKFMNAHLQKPYEINLMEE
LTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFY
IHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLGETYLHRIG
RSGRFGHLGLAINLITYDDRFNLKGIEEQLGTEIKPIPGIIDKSLYVAEYHSESGEEVKQ
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgagcaccaccaggacggagaacccagtgatcctgggcttgtccaaccagaacggacag
ctgagaggttcggttaaacccgccggcgctccgggtggaggcggaggaggcccccagcag
cagatgaaccagatgaaaggcacaatcaacgggagctcccagccagcacctcagacaaac
gcagtcatcaagcctggagacgactggaagaaaaatttgaagttgcccccaaaggacatg
aggattagaacttcagatgtgactgcaactaaaggcaacgagtttgaagattactgctta
aagcgggagctgctcatggggatctttgagatgggctgggaaaagccatctccaattcag
gaggaaagcattcccattgcactgtcagggagggatattttggccagagccaagaacggc
acaggaaagagtggcgcctacctcattcctttactggaacgcatcgacctgaagaaggac
tgtttacaagctttggtcatcgtgcccaccagagagctggctctacaagttagccaaata
tgcatccaggtcagcaaacacatgggcggcgtgaaggtgatggcgaccacaggtggaacc
aacctccgtgacgacatcatgagactcgacgaaacggtacacgtggtcatcgccactccc
gggaggattttagatctaatcaagaaaggagtagccaaagtcaatcaagtgcagatgatc
gttttggatgaagcggataaactcctgtctcaggactttgtggttatgatggaggagatg
ctgggtttcctctccaaacagaggcagatcttgctttactccgccacctttcctcttagc
gtgcagaagttcatgaacgcgcacctgcagaaaccgtacgagatcaacctgatggaggag
ctgacgctgaagggcgtgactcagtattacgcttacgtaaccgagaggcagaaagtccat
tgcctcaacaccttgttttccagactccagatcaaccagtctataatcttctgcaactcc
tctcagagagtggagctccttgccaagaagatctcccagcttggttattcgtgtttctac
atccatgccaagatgagacaggagcatcgcaaccgggtgttccacgacttcagaaacggc
ctctgccggaatctcgtctgcactgacctcttcacgagaggaatcgacattcaagctgtg
aatgttgtgatcaacttcgatttccccaagctgggagaaacgtaccttcatcgcatcggc
agatctggacgttttggacacctgggtctggccatcaacctcatcacgtacgacgaccgc
ttcaacctgaagggcatcgaggagcagctcggcacggagatcaagcccatccccggaatc
atcgacaagagcttgtacgtggccgagtaccacagcgagagcggagaggaagtcaaacag
tga
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