Kryptolebias marmoratus (mangrove rivulus): 108236140
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Entry
108236140 CDS
T05608
Symbol
ddx5
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108236140 (ddx5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
kmr03041
]
108236140 (ddx5)
03009 Ribosome biogenesis [BR:
kmr03009
]
108236140 (ddx5)
Enzymes [BR:
kmr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108236140 (ddx5)
Spliceosome [BR:
kmr03041
]
Complex A
U1 snRNP components
U1 related factors
108236140 (ddx5)
Complex B
108236140 (ddx5)
Ribosome biogenesis [BR:
kmr03009
]
Eukaryotic type
Pre-60S particles
Helicases
108236140 (ddx5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
108236140
NCBI-ProteinID:
XP_017272097
UniProt:
A0A3Q3AKQ4
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All DBs
Position
LG12:complement(17397494..17402611)
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AA seq
618 aa
AA seq
DB search
MPGYSDRDRGRDRDRGYGSGPPRFGGSRSGAGGGGGKFGNPGERLRKKHWNLNELPKFEK
NFYQQHADVAHRTPQEIEQYRRTRTITMKGRDCPNPITKFHEASFPSYVMEVINKQNWTE
PTPIQAQGWPLALSGKDMVGIAQTGSGKTLAYLLPAIVHINHQPFLERGDGPICLVLAPT
RELAQQVQQVAAEYGRASRLKSTCIYGGAPKGPQLRDLERGVEICIATPGRLIDFLEAGK
TNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKE
YVQINVGALQLSANHNILQIVDVCNDGEKENKLIRLLEEIMSEKENKTIIFVETKRRCDD
LTRRMRRDGWPAMGIHGDKSQQERDWVLNEFKFGKAPILIATDVASRGLDVEDVKFVINF
DYPNNSEDYIHRIGRTARSQKTGTAYTFFTPNNMRQAGDLISVLREANQAINPKLLQMAE
ERGGRSRGGRGDYRDDRRNRYSTGRRDYGGGRDRDGGRSFENGPSKAFGANSQNGGYGAS
NGTSNGYAGGTFGSNGQSNFTGAQAGSFGGQNNFQAQQFAPGNAVTQNGGNHFAFPQGQA
PQHPPPLAPFSMAPQFSQ
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atgcctggatattccgacagagatcgcggcagagatagagatagaggctatggcagtggg
cctccccggttcggtggcagtcggagtggagccggaggcggtggagggaagttcggcaat
cccggtgagcgactccggaagaagcactggaacctgaacgagctcccgaagttcgagaaa
aacttctaccagcagcacgccgatgtcgcccacaggaccccgcaagagattgaacaatac
aggaggaccagaacgattacaatgaaagggagagactgtccaaaccccatcacaaagttc
catgaagcaagcttcccctcttacgtaatggaggtgatcaacaaacagaactggactgaa
ccaacacccatccaggcacagggttggcccctggctctcagcgggaaggacatggtcggc
atcgctcagaccggctctgggaagacgctcgcttatctgctgcctgcaattgtccacatc
aaccaccagcctttcttagaacgtggagatggtccaatttgcttggtgctggccccgacc
cgtgagctcgcccagcaggtgcaacaggtggccgcagagtatggcagagcttctcgtctg
aaatccacctgcatctatggaggagcaccgaaaggacctcagctccgtgacctggaaaga
ggtgtggagatctgcattgccactccgggcagactcatcgactttcttgaggcgggaaag
acaaaccttcgcagatgcacctacctggtgctggatgaggccgacagaatgctggacatg
ggctttgagccacagatccggaaaattgtcgaccaaatcaggcctgacagacagactctg
atgtggagcgccacttggcctaaagaggttcgccagctggcagaagacttcctgaaggag
tacgtgcagattaacgttggcgcgttgcagcttagcgccaaccacaacatcctccagatt
gtggatgtttgcaatgatggagagaaggagaacaagctcatccgtctacttgaagaaatc
atgagtgagaaggaaaacaagaccatcatctttgtcgagaccaaaaggcgatgcgatgac
cttacccgtagaatgaggagggatgggtggcctgctatgggaatccatggtgacaaaagc
caacaagaaagagactgggttcttaatgagttcaaatttggaaaagccccaattctgatt
gccacagatgttgcatccagaggtctagatgttgaagatgtgaaatttgtcatcaacttt
gactaccccaacaactctgaggactatatccaccgcattggcagaacggctcgtagccaa
aagacgggcacggcctacaccttcttcaccccgaacaacatgaggcaggccggggacctc
atctctgtgctccgcgaggccaaccaggccatcaatccgaagctcctgcagatggcagaa
gaaagaggaggtcgttcaagaggcggcagaggcgactatagagatgaccgtcggaatagg
tattccactggaagacgtgactacggtggcggtagggacagggacggtggtagaagcttt
gaaaatggaccaagcaaggcctttggcgctaactctcagaacggaggctacggcgccagt
aacggcaccagcaacggctacgctggaggaaccttcggcagcaatggacagtccaacttc
actggcgcccaggcgggctccttcggcggccagaacaacttccaggcccaacagtttgcc
cccggcaacgctgtgacgcagaacggtgggaaccacttcgccttccctcagggccaggcc
ccacagcaccctccccctctggcgccgttctccatggcgccacagttctcgcagtaa
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