Kryptolebias marmoratus (mangrove rivulus): 108236298
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Entry
108236298 CDS
T05608
Symbol
taf5
Name
(RefSeq) transcription initiation factor TFIID subunit 5 isoform X2
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
108236298 (taf5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
kmr03021
]
108236298 (taf5)
03036 Chromosome and associated proteins [BR:
kmr03036
]
108236298 (taf5)
Transcription machinery [BR:
kmr03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
108236298 (taf5)
Coactivators
SAGA/TFTC/STAGA complex
108236298 (taf5)
Chromosome and associated proteins [BR:
kmr03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
108236298 (taf5)
STAGA complex
108236298 (taf5)
TFTC complex
108236298 (taf5)
SAGA complex
108236298 (taf5)
SLIK complex
108236298 (taf5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
TFIID_NTD2
WD40_WDHD1_1st
WD40_Gbeta
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_2nd
Beta-prop_EML_2
Beta-prop_TEP1_2nd
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_WDR36-Utp21_1st
WD40_MABP1-WDR62_1st
NBCH_WD40
ANAPC4_WD40
Beta-prop_IFT122_1st
Beta-prop_SCAP
Beta-prop_WDR75_1st
Beta-prop_Aladin
Beta-prop_TEP1_C
Beta-prop_VPS8
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_EIPR1
Beta-prop_WDR41
Beta-prop_DCAF4
Beta-prop_Vps41
Beta-prop_SPT8
WD40_RFWD3
Beta-prop_HPS5
Beta-prop_WDR19_1st
Tricorn_2nd
Beta-prop_Nup120_160
PEP5_VPS11_N
WD_LRWD1
LisH_PAC1
Beta-prop_DCAF12
Beta-prop_WDR11_2nd
VPS8_N
PROPPIN
CDK5RAP3
Beta-prop_ACSF4
LisH
RAB3GAP2_N
Beta-prop_ELP1_1st
DUF7165
Motif
Other DBs
NCBI-GeneID:
108236298
NCBI-ProteinID:
XP_017272350
UniProt:
A0A3Q3BEQ0
LinkDB
All DBs
Position
LG3:24056079..24061265
Genome browser
AA seq
749 aa
AA seq
DB search
MAAVQGGLVDAKDEIDIKTEPTADGFGNNNASDSRVLSTPPGSSAAAGNNKPAAGTPEEQ
QTLLAVLQFLKKNKLSESAEILRREAGLPEDALDPKGTDGTGAGPGAAAGSADTDAGDAS
SLLSRVTVSSSAGAQAPTKAAGEDQPDVSVVLSAYSQQGDPALYEVYYSGLKRFIESVLD
CHRAELSQVFYPLFVHMYLELVYNNHESEAKAFFEKFSGDQECYYEEDLRILSSLTKKEH
MRGNETLLDFRTSKFVLRISRDSYQLLKRHLQERQNNQIWNIIQEHLYIDIFDGMPRSKS
QIDAMSGSLAGEARREANKAKVYYGLLKEPEIELPLDDEDEEAENEEGKPKKKKPKKDSI
GNKSKKQDPNAPAQTRIPLPELKDSDKLDKIMYLKEATKKIRLGSDNLPSICFYTFLNAY
QGLTAVDFTDDSSLIAGGFADSTVRVWSVTPKKLRKVKTAADLNLIDKESDDVLERIMDE
KTASESKVLYGHSGPVYGISFSPDRNYLLSSSEDATIRLWSLQTFTCLVGYKGHNYPVWD
TQFSPHGYYFISGGHDRVARLWATDHYQPLRIFAGHLADVTCTRFHPNSNYVVTGSSDRT
IRLWDVLTGNCVRIFTGHKGPIHALAFSPNGKFLASGATDGRVLLWDIGHGLMVSELKGH
TDTVYSLRFSRDGEILASGSMDNTVRLWDAMKAFDDLETDDFTAATGHIHLQDNSQELLL
GTYMSKSTPVVHLHFTRRNLLLAAGAYNP
NT seq
2250 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgtgcagggtggtctggtcgacgcgaaagacgaaatagacattaaaacggaa
ccgacggccgatggcttcggaaacaacaacgcgagcgacagcagggtgctctccacgccg
cccggctcgagcgccgcggccgggaacaacaagcccgcggcgggaacccccgaggaacag
cagacgctgctggcagtcctgcagttcctcaaaaagaacaaactgtcggagtccgccgaa
attttgcgtcgcgaggcggggttaccggaggatgctctggatccgaaagggacggacggc
accggggcaggaccgggagccgcggcggggagcgcggacacagacgccggggatgcgagc
tctctgctcagccgggtgaccgtgtcttcctccgccggagctcaggcgccaaccaaggca
gccggggaggatcagccagatgtcagcgtggttctgtcagcctacagccagcagggagat
ccagctctgtatgaagtttactacagcggcctgaagaggttcattgaatcggttttggac
tgccacagagcagagctgtctcaggttttctacccactgtttgtccacatgtacctggaa
ctggtgtacaacaatcatgaaagtgaggccaaggccttctttgaaaagttcagtggggac
caggagtgctactacgaggaggacctgcgtattttatccagcctgacaaagaaggagcac
atgagaggcaacgagacgctgctggacttccgcaccagcaagtttgtcctacgcatctcc
cgtgactcctaccagctgctgaagagacacctgcaggagcggcagaacaatcagatctgg
aatatcatccaggagcacctctacatagacatcttcgatgggatgccgcgcagcaagagt
cagatcgatgcgatgtcaggcagcctggcaggagaggccaggcgggaagccaataaggca
aaggtttactatggcctgctgaaggagccagaaatcgagctgcctctcgatgatgaggat
gaggaggcagagaacgaggagggtaaacccaagaagaaaaagcccaaaaaagacagcatt
ggcaacaaaagcaagaagcaggatccaaatgctcctgcacagacgagaatacctctgcca
gagctcaaagactctgacaagttggacaagatcatgtacttgaaggaggccaccaagaag
atccgtttgggttcagataacctcccttccatctgcttctacacttttctcaacgcgtac
cagggtctgactgcagtggacttcacagacgattccagcctgattgcaggcggctttgcc
gactccacggtcagggtgtggagcgtcacgccgaaaaagctccgcaaggtcaagactgct
gcagacttgaacctgattgacaaggagtcagacgatgttctggagaggattatggatgag
aaaacagccagtgagtcgaaggttctttatggacacagcgggccggtgtacggcatcagc
ttcagcccagacagaaattaccttttgtcaagttctgaggatgctaccatcaggctgtgg
agtctccaaacgtttacctgtctggtgggctacaaaggccacaattaccccgtatgggac
acacagttttcacctcacgggtactattttatctcagggggacacgaccgggttgcccgc
ctttgggcgacagatcattaccagccgctgcggatatttgctggtcacctggctgacgtc
acttgtactcgtttccacccaaactcaaattatgtcgtcacgggatcgtctgaccgcacc
atccgcctctgggacgtcctcactggaaactgtgtccgcatcttcacgggtcataagggt
ccgattcacgctctggctttctctcccaatgggaagttcttggcctctggagccaccgat
ggaagagttcttctgtgggacatcggtcatggactgatggttagcgagctgaagggtcac
acagataccgtctattccctcagatttagcagggatggagagattctcgcctccggttct
atggacaacacggttcgcctgtgggatgccatgaaagcgtttgacgatttagagactgat
gacttcacagcagctacaggacacatccatctacaagataactcccaggagcttttgctt
ggcacctacatgtctaaatcgacgccggtcgtacaccttcacttcacacggaggaacctg
cttctggctgctggagcctacaatccataa
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integrated database retrieval system
