| Entry |
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| Symbol |
scaf4a
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| Name |
(RefSeq) SR-related and CTD-associated factor 4 isoform X1
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| KO |
| K13167 | SR-related and CTD-associated factor 4 |
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| Organism |
kmr Kryptolebias marmoratus (mangrove rivulus)
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| Brite |
KEGG Orthology (KO) [BR:kmr00001]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:kmr03021]
108237044 (scaf4a)
03041 Spliceosome [BR:kmr03041]
108237044 (scaf4a)
Transcription machinery [BR:kmr03021]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
108237044 (scaf4a)
Spliceosome [BR:kmr03041]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR proteins
108237044 (scaf4a)
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
LG13:11223690..11236880
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| AA seq |
1191 aa
MEAVNAFNQELFSLMDSKPPISRAKMISITKSAIKAMKLYKHVVQIVEKFIKKCKPEYKV
AGLYVVDSIVRQSRHQFGPDKDVFGPRFTKNITGTFENLCLCPIEDRSKIVRVLNLWQKN
GVFKIEVIQPLLDMAAGSGSGAASIISTDEPGSSPPPAKEPVTVVTANSTATSVPQLHNS
DAFAAVAQLFQTSQGQQLQQMLQNFQQQPTKPETNPQPPPPSIQAPVQNISAGLSTVVPQ
PPVPSPQLPVPSSQPPLPSQLTQQKTAFDKKLLDRFDYDDEPEVGEEPKKDEISSQPPFM
QQPPAFPQHMEHFNTQMMNISQDLAQQVPLPPNGQLQACGVLPGQSFPIVMPPMGHGLPG
QPLPGSTGPPGFLGVYPPQNVPQDSSVDMDHSSMRDGRHGRRSHSGSRSPKRRRSRSNSR
TRRSRFRRSRSRDRRHSSPRSRSQERRERERERERRQKGLPPPKSETLSVCSTTLWVGQL
DKRTQQQDVASLLEEFGQIESINMIPPRGCAYIVMIHRQDAFRALQKLSRGSFKVNQKAI
KIAWALNKGIKPEFKQYWDVELGVTYIPWSKVREDQLEELKEGGMLDVDTLSPEWSSVRK
TFDHLEEPTHNGRSEQQQPEETQVLPIAAPPAQVSPMQQPMVGVASLPPPIFPGPIGMPP
PSFTPGIPPPPFIRPGFNPLQMPPGFPPSGPMPLGPTPPPKGGVDEPPQDPAGLGRKKNE
GHEGPNIFNNQMGPIGNQVGTPPVGPPGGLLGVPLPNPSGGPPIGLPGGPLVGPPGRPLI
GPPGGPLVGPPGGPLVGPTIGLPGGPPSGHPGNMQPPSGGLLGARPGIIPLQRPPGPPPP
PPPQHMQRFPPPHGPRPPHSTMPPNSPQMIPRGPHPQMIRHEPPPPKGGFGMPPPHNIRA
PFPHGQGPPPQATPPPPPFIRPGGPRGLEGPEEMEDRPFRGERPAFRDREQERDREWDRD
RDRDRDRDRGFGGGRRSFGDGGRGAGGDKMDGRDRHGGWQEDGGNHRGGGWERDRDRERD
RDRDRDRDRDRDRSRRDWRERRGSPDRDRERGRGDDGERDRGRGEGADRNRGEGANMDKG
KGPENKGDKPRRSERRERTSRWDKDDRLAELENMDKFRSFNSLEQPRVTPGVTMDTSKAP
DGKASEKKEQSEHLALPSEVTTTTTTEKPVPSEPLQSASSEPTETKKEGSS |
|---|
| NT seq |
3576 nt +upstreamnt +downstreamnt
atggaggccgtcaacgcctttaaccaggagttattctcactgatggactccaagccgcca
atatctcgggcgaagatgatctccatcaccaaatcagccatcaaagctatgaaactctac
aaacatgtggtccagatcgttgaaaagtttatcaaaaagtgtaagcccgagtataaggtg
gcgggtctgtatgtggtggattccattgtcaggcagtccagacaccagtttggaccagac
aaagatgtatttggtccaaggttcaccaaaaacattacaggaacatttgagaacctttgc
ctttgccccatagaggacaggagcaagattgtgcgagtgttgaacctgtggcagaagaac
ggcgtgtttaagattgaagttattcagcccctcctggacatggcagctggctctggcagt
ggtgctgcatccatcataagcacagatgagcccggttcctcgccacctccagccaaagag
ccagttaccgtggtaacagccaactctaccgcaacatcagttcctcagctgcacaactct
gacgcctttgcagctgtggcgcagctcttccagacctcacagggtcagcagcttcagcag
atgctccagaacttccagcagcagccgacgaagcctgaaaccaatccgcagcctcccccg
ccttccattcaagcaccagtccagaacatctccgctggcctgagcacagtcgtgccacaa
cctccggttccgtcaccacagcttcctgtcccctcatcgcaacctcccctcccctcacag
ctgacccagcagaaaacggcttttgacaagaagcttctggatcgtttcgactacgacgat
gaaccagaagttggggaagaacctaagaaggatgagatctcttcacagcctccttttatg
caacagcctccagcctttccccagcacatggagcactttaacacacagatgatgaatatt
tcccaagatcttgctcaacaagttcctttgcctcctaatggtcagctgcaggcgtgtggg
gtgctgccaggtcaaagcttccctattgtgatgccccctatgggccatggtctgccaggg
cagccccttcctgggtccactgggcctccaggtttcctaggggtgtatcctcctcaaaat
gtaccccaggattcctccgtggatatggaccattcatcaatgagggatggccgacatggt
cgaaggtctcactcaggctccaggtctccaaagaggaggcggtcccggtccaactcccgt
acgcggcggtccaggttcaggcgatctcgctccagagaccgccgtcactcttcaccgcgt
tcccgctcgcaggagcgcagagagcgggagagggagagagaacggcggcagaaaggcctg
ccgccacccaagagcgagacactcagcgtttgtagtacaactctctgggtgggtcagctg
gacaagagaacacagcagcaagatgttgcctctttgctggaggagttcgggcaaatagaa
tccatcaatatgatccctccacgtggctgtgcttatatcgtcatgatccacaggcaagat
gctttcagagctctgcagaagctcagtagaggatcttttaaagttaatcagaaagccatc
aagattgcttgggctttgaacaagggcataaagcctgagtttaaacagtactgggatgta
gagctgggtgtcacctacataccttggtctaaagtcagagaggaccagttagaggagctg
aaagaaggaggaatgctggatgtggataccttatcaccagagtggagtagtgtccgaaag
acttttgaccacctcgaggagcccactcacaatggccgatctgagcagcagcagcctgag
gagactcaagtactacctatagctgctcctcctgcacaggtttccccaatgcagcagcca
atggtgggcgtggcttctctaccacctcccatctttcccggtcccatcggaatgccgccg
ccttccttcactccaggcataccccctcctccttttatcagacctggattcaaccccttg
caaatgcctccaggttttcctccttcaggacctatgcctttaggtcccacacctcctccc
aaaggtggagttgatgagccgcctcaggacccagcaggtctgggcagaaagaaaaacgag
ggccacgagggccccaacatcttcaacaatcagatgggacccatcggtaaccaggttggt
actcctccagttggacccccaggtggtcttctaggtgtacctttacctaatccttcaggt
ggtcctccgataggtcttccaggtggtcctctggttgggcctcctggtcgaccactgatt
gggcctcctggtggtcctctggtcgggcctcctggcggtcctctagtaggacctacgatt
ggtcttccaggtggtcctccaagtggtcatcccgggaacatgcaacctccctctggtggt
ctgctgggtgcacggcctggaataattccgctccagcggcccccaggtccaccaccacca
ccaccaccacaacacatgcagcgtttccctcctccccacgggccaagaccacctcactcc
actatgccccctaattctccacagatgatacccagggggccacaccctcagatgatacgc
cacgagccccctccacctaaaggaggctttgggatgccccctccacacaatatcagggct
cctttccctcatgggcaaggacctccccctcaagctacccctcctcctcctccatttatc
agaccgggtggtcccagaggcttagaaggaccagaagaaatggaggacagaccatttaga
ggagaaaggcctgcattcagggatcgagagcaggagagggaccgagagtgggatcgagac
agagatagagacagggacagggacagaggtttcggagggggtagacgttcttttggtgac
ggagggaggggagctggtggtgacaaaatggacgggagagacagacacggaggttggcag
gaagatggaggcaatcaccgtgggggaggatgggagcgagacagagatcgagagagagac
agagatcgggatagagaccgggaccgtgatcgggacagaagtaggcgggattggagagag
aggcgaggcagtcctgatagggacagagaacgggggcgcggtgatgacggggagcgagat
cgcggtaggggggagggagcagacagaaacaggggagaaggggcaaacatggacaaaggt
aaaggacctgaaaataaaggggacaagccaaggcggtcagaacgacgagagagaacctca
aggtgggacaaggacgatcgactggccgaactggaaaacatggacaaatttcggagcttc
aacagcctggagcagcctcgtgtgacacctggggttaccatggacaccagtaaagcccca
gatgggaaagcctctgaaaagaaggaacaatctgaacatttagctttgccttcagaggtc
accactactactactacagaaaaacctgtgccctctgagcctctacagtcagcttcaagt
gagcccacagaaacaaaaaaagaaggctcgtcatag |
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