Kryptolebias marmoratus (mangrove rivulus): 108237047
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Entry
108237047 CDS
T05608
Symbol
ltn1
Name
(RefSeq) E3 ubiquitin-protein ligase listerin
KO
K22377
E3 ubiquitin-protein ligase listerin [EC:
2.3.2.27
]
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
kmr03009
]
108237047 (ltn1)
04121 Ubiquitin system [BR:
kmr04121
]
108237047 (ltn1)
Enzymes [BR:
kmr01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108237047 (ltn1)
Ribosome biogenesis [BR:
kmr03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
108237047 (ltn1)
Ubiquitin system [BR:
kmr04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
108237047 (ltn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LTN1_E3_ligase_6th
UBC_like
Ltn1_1st
LTN1_E3_ligase_5th
zf-RING_2
zf-ANAPC11
FANCL_C
zf-rbx1
RINGv
zf-RING-like
zf-RING_16
zf-C3HC4_2
C1_1
Motif
Other DBs
NCBI-GeneID:
108237047
NCBI-ProteinID:
XP_017273716
UniProt:
A0A3Q2ZSE2
LinkDB
All DBs
Position
LG13:complement(12209005..12222025)
Genome browser
AA seq
1763 aa
AA seq
DB search
MGGKNKQRTKGNVRPSSSGRAAEVLTREGGVIPGFVGFDTTVTSELSYVPAVHGAEEIDN
LVDADFRLVLRKLSKRDVVTRLKAVQDFGSMCQERDAEEVKGVLPYWPRIYCKISVDHDR
RIREATQLAFEQLVLKVRRSLAPFLKSLMGHWILSQCDTYTPAASAACKAFQAAFSPTKQ
PEALSFCKDEILNVLQDILLKETANTLSDPQSVTEEERESKYVRMLTSSLLGVKRLLSLL
LQTDRGALEPGLAQLVNSGKFWKYSKHKTPQVRGAFFEMVCALCEFTPALVQAEATRLCP
AVLLSIDDTDPVVLPPVWEAVLHVVSTIPDCWTHVNAKKGFLPKLWALLKEGGKGMAKAL
HPNLMPLLSKLPQQVTDPSLDFYTTFFTAFMQGLSSERAVTSPSESAIIVTSFVECLRYC
ILQNAEEEHSQEKIRTTLVSQQLLPLLEKAIRNPSLQNGPLFLLVTEMLVSWERRAGLHS
EDEEDSKKEVFERLLADFWEDICHLCVGFVDNEEADPQALEGVAILLQVMRYPERVSKKH
LQKKKSVRVCLSKPEEDEKTGVQGDGAEKLVQTASELVNEKAFGSLQTQHFEDAVCQLAQ
LCLVHVNEKNSEKHLIFLSLLLQSFHTSRVFGALVEFDEKIPEAGQWRDEKNPAVQFLLK
GAVVWLAEVGRSNTEHLVEMVFSSLCCCNQEETTRILNHITTMGLQWGIILQIIQRACKD
AETRASCADWLKGSILGEQLLGLTEELCKVGSSSRASTSSTSCHSWALISLVLSQNHNNE
SLIGEVYMEMILEKLHTTLTETKSLSDAGNMEPLISFICDVASSFFSSVQDCLLLLSAEE
LLLTVFQLTAQDQRHTHLSKSLLDKLKTVCVAGVQSLVQHCEYEVAEGGFLHSAAVWVVK
QVLTVPLDIKSLQVLVMAVQSLVETIISAGNQASPILNHLFNLLTPSQTEWTRIREALPS
QWIKTPLLANRHRGVCEKPSQDTWKFRELNRLPAHLCVCALLGRVAQTASRDQKETQCPS
PLPNLTNTVSELLYALQWCKELKYSPTVVSAYHNLLAEWGLSDGHHNQVPMKPLLQILYS
RSVMDGGLWSLTLENYINTNNLAITHGAALRGLYGSSDSLFPVSQSKLSTVQVLCPVMTK
EDKETLVALATAGLINWQENDDVYGCLAVLLCCLNANTQVEDEVVQAILATLMEWRNSRE
DWFLFSCNLAEATSEQLNLNVEMMRFLTWLVTHRPSVLGGNQWDFLLCSMLAWLETASEN
VSSLWNPWVQLFVCENSALIVKLNQFFTSSSSGVLEKLPSELASEWRDFFVDGIYNLLLP
LPVKITEAFIEPDDPVFPLSVLQSVGLALTHVPVQQLTQNSLPPRFIADQKTNLPEPLQT
LLNTLCPLLLFKARPLQITVHHVLEKVMPQLPECDGDGDSKSDDDKDELCLSPPASLMAI
LSTCEELCDNILAGVQVGEFAVVQPLSVEYSCVLGYLLAWKLLLTFFKSSPSHLRAHYAQ
YLKRSCSLNKLLLHLFKLMPENPVYPGQESETKETKTFFTETLILTVDENDSVKWELPHL
ACSVYYSTVQDLPAMVRLWWNSQEKRVSSAVEKFTSKYVSPVLSAQEISSVYSSTQMFDS
MTVKARSAAREVIATYSVDDIYIELVIQLPQNYPLSSIAVESGRRVGVAVQQWRNWMLQL
STYLTHQNGSIMEGLALWKNNVDKRFEGIEDCMICFSVIHGSNYSLPKKACRTCKKKFHS
ACLYKWFTSSNKSTCPLCRETFF
NT seq
5292 nt
NT seq
+upstream
nt +downstream
nt
atgggcggtaagaacaaacagcgaacaaaaggaaatgttcggccgtccagcagcggccga
gctgcagaggttctgacccgggaaggtggtgtcatcccgggcttcgtgggcttcgacact
accgtcacttcggagctgagctacgtcccggctgtccacggagcggaggaaatagacaac
ctggtggatgctgatttccgcttggtgctcaggaaactctccaagagggatgttgtcacc
agactgaaggctgtgcaggattttgggtccatgtgtcaggaacgggatgctgaagaggtg
aaaggagtcctaccgtactggccaagaatctactgcaaaatatcagtggatcacgatcgc
cgaatcagggaggccacccagctggcctttgagcagctggtgctaaaagtgcgtcgcagc
ttggcgccctttctgaagagtctgatgggccactggattctgtcccaatgcgacacttac
acacctgcagcctctgctgcgtgcaaggccttccaagctgccttctcacccaccaaacag
cccgaggctctcagcttctgcaaggatgagatccttaatgtacttcaagatattttgtta
aaagaaactgcaaacacacttagtgacccacaaagtgtgaccgaggaagagagagaatcc
aaatacgtgcgcatgctgaccagttccctgttgggggtgaagagactgctttcactgctg
cttcagaccgacaggggagccttggagccaggactggcacagctggtcaactctgggaag
ttctggaagtacagcaaacacaagacaccgcaggtgagaggggccttttttgagatggtg
tgtgctctgtgcgagttcactcctgctctggtccaagctgaagcgacacgactctgccct
gctgttctcctcagcatcgacgacacagaccctgttgtgctgcctcccgtgtgggaagct
gttcttcacgttgtgtctacaatccccgactgctggacacatgtaaatgccaaaaaaggc
ttcctacctaaactttgggctttattaaaagaggggggtaaaggcatggctaaagcgctg
cacccaaatctaatgcctcttcttagcaaactgccccaacaagtcactgatcccagcctg
gacttttacaccactttcttcactgcgttcatgcagggtctgtctagtgagcgtgccgtg
acaagcccatcagaaagtgccataatagtgacatcttttgtcgagtgcttgaggtactgc
atactgcaaaatgcagaagaagaacattcccaggagaaaatcaggacaacgcttgtttca
cagcagcttctgcctttattagaaaaggctatcagaaatccttcccttcagaatggccct
cttttccttttggtcactgagatgctcgtttcctgggagagaagggcaggtttacacagt
gaagatgaggaagactccaagaaggaagtctttgaacggcttctggctgacttctgggag
gacatttgtcatttgtgtgtgggttttgttgacaacgaggaagcagatccacaggctttg
gagggtgtagccattttgcttcaggtgatgcgttatcctgagagagtaagcaaaaaacac
cttcagaagaagaaatctgtcagggtgtgtttgtctaagccagaagaggatgaaaaaact
ggtgttcagggggatggtgcagaaaagcttgtgcagacggcgtcggagcttgtgaatgaa
aaagcattcgggtccctacagacgcagcattttgaagacgccgtgtgccagctggcacag
ctgtgcctggtgcatgtgaatgagaaaaactcagagaaacatcttattttcctctcactt
ctcctgcagtccttccacacatcaagggtgttcggtgccttagttgaatttgatgaaaaa
ataccagaagctggtcaatggagggatgagaagaatcctgcagttcagttcctgctgaag
ggagcagttgtgtggctggctgaggtggggcgcagcaacactgagcacctggtggagatg
gtttttagttcactctgctgctgcaaccaggaggagaccactcgtatcctcaaccacatc
accacgatgggtttgcagtggggaattatcctgcaaattatccaaagggcctgtaaagat
gctgagactcgtgcgagctgcgctgattggctgaaaggttcaattctgggtgagcagctc
ttgggactgactgaggagctctgcaaggtggggagcagctctcgtgcttccacgtcgtct
acaagctgccacagttgggcgcttatcagcctcgtcctctctcagaaccacaacaatgag
tctttgattggggaggtatacatggagatgatcttagaaaagcttcacaccactctaacg
gagaccaagagtttgtccgacgcaggcaacatggaacccctcatctccttcatatgcgac
gtggcttcttccttcttctcctctgtacaagactgtcttctgctgctctcagccgaggag
ctgttgctcaccgttttccagctcactgcccaagatcaaagacacactcacctgtccaaa
tccctgttagataagctgaagacagtgtgtgttgctggagtccagtcactggtgcaacac
tgtgaatatgaggtggcagaaggtggtttcctgcacagtgcagctgtttgggtggtgaag
caagtactaacagtccctctggatatcaaaagtttgcaggttttggttatggctgtacaa
agcttagtggaaacgatcatctctgcaggaaatcaggcttcccccatcctgaaccactta
tttaatcttctgacacccagccagacagaatggacaagaatcagagaggccctgccttct
cagtggatcaaaactcccttactggccaatcgtcacaggggagtttgtgaaaaaccttct
caggacacttggaagtttagggagttaaacaggctgcctgcccacctttgtgtctgcgcc
ttattgggaagggtggcccagaccgcttcacgtgatcagaaggagacacagtgtccttca
cctctgccaaaccttacaaacacagtttcagaactgctgtatgctctgcagtggtgtaag
gagcttaaatacagccccacggtggtatctgcgtatcacaacctgctggctgaatggggg
ctgtcagatggacaccataaccaggttccaatgaaacctctcctacagatcctctactca
aggtccgtaatggatggaggtctgtggtctctgactctagagaactacatcaacacaaac
aacttggcaatcactcatggtgcagctctgaggggactttatggtagttcagacagtctg
ttcccagtgtctcaaagcaaactgagcacggtccaggtgctctgcccagtcatgacaaaa
gaagacaaagaaactctcgtcgctttggccaccgctggattaatcaactggcaagagaac
gatgatgtatatgggtgtctggcagtgctgctgtgctgtctgaatgccaacacacaagta
gaggatgaggtcgtgcaggctatcctggccacgttgatggaatggaggaacagcagggag
gactggttcctctttagctgtaacctggctgaggctacatctgaacagctgaaccttaat
gtggagatgatgcgattcttgacttggctggtgactcatcgtccatcagttcttggagga
aaccagtgggacttcttgctttgctccatgttggcctggttggagactgccagtgagaac
gtgagcagtttgtggaacccctgggtgcagctgtttgtgtgcgagaactctgcgttgatt
gtaaaactgaaccaattcttcacgtcgtcttcttctggcgtgctggagaagctgccatca
gaactggccagtgaatggagagatttcttcgtagacggaatctacaacctgctgttacct
ctgcctgttaaaatcactgaggccttcattgaaccagacgaccccgtgttccccctgtct
gtgctgcagtcggtcggtttggctctgacacatgtaccagtgcagcagctgacccaaaac
tccttgccgccacggttcatagcggaccaaaagacgaacctgccagagcctctgcagacg
ctcctcaacactctgtgccctctgctgctgttcaaggccaggcctctgcagataactgtg
caccacgtgttggaaaaggtcatgcctcagctgcctgagtgtgatggagacggggacagc
aagtctgatgatgacaaagacgagctgtgtctttcccctccagcttcgctcatggccatc
ctgtcgacctgcgaggagctgtgcgataacatcctggctggagtccaagtgggagagttc
gcagtggtccagcccctcagtgtggagtactcttgcgtcctgggctacttgctggcgtgg
aagctgcttctcacatttttcaaatcttccccctcccacctgcgtgcccattatgctcag
tatctgaagagaagctgctctcttaacaagctgctcctccatctcttcaaactgatgccc
gagaacccggtttatccaggacaggagtcggagacgaaagagaccaaaaccttctttaca
gaaaccctgattctgacagttgacgagaacgacagcgttaagtgggagctccctcacctg
gcgtgcagcgtgtactacagcaccgtgcaagacctgcctgccatggtgcggctgtggtgg
aacagccaggagaagagggtgagctcagccgtggagaagttcaccagtaaatacgtcagt
cctgttctctcagcccaggagatctcgtccgtctacagcagcactcagatgtttgacagc
atgaccgtgaaggctcgctcagcagcacgagaggtgatcgctacctactctgtggatgac
atctacatcgagttggtgattcagctgccacagaactaccctctgagctctatcgctgtg
gagagtgggcggcgtgtgggcgtcgccgtgcagcagtggaggaactggatgctgcagctg
agcacctacctcacacatcagaatggcagtataatggagggcttggctctgtggaagaat
aatgtcgacaagcgattcgagggaatagaggactgcatgatctgcttctctgttattcac
ggctccaactactctctgccaaaaaaggcttgccgcacctgcaagaagaagttccactcg
gcatgtttgtacaaatggttcacttccagcaacaagtccacctgtccgctctgcagagaa
acgttcttttaa
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integrated database retrieval system
