Kryptolebias marmoratus (mangrove rivulus): 108237179
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Entry
108237179 CDS
T05608
Symbol
usp42
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 42 isoform X1
KO
K11855
ubiquitin carboxyl-terminal hydrolase 36/42 [EC:
3.4.19.12
]
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
kmr01002
]
108237179 (usp42)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
kmr04121
]
108237179 (usp42)
Enzymes [BR:
kmr01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
108237179 (usp42)
Peptidases and inhibitors [BR:
kmr01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
108237179 (usp42)
Ubiquitin system [BR:
kmr04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
108237179 (usp42)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
UCH_1
Motif
Other DBs
NCBI-GeneID:
108237179
NCBI-ProteinID:
XP_017273909
LinkDB
All DBs
Position
LG17:12678690..12689886
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AA seq
1183 aa
AA seq
DB search
MTIVDRSSEKSDHESVGFNRSSFTSGDVGMDGSCSSSWAVGPTRPSDSPRLKSPGGCLGP
TPGAAVYNSAASSVDRPKDQVISSGDGIDLPQKVLFPPERLSLKWAQVHRVGAGLQNMGN
TCFLNSALQCLTYTPPLANYMLSREHSKTCHEPGFCMMCTMQNHVIQVFANSGNVIKPIG
VLNELKRIAKHFRYGSQEDAHEFLRYTVDAMQKSCLPGTKLDRQTQATTFIHQVFGGYLR
SRVKCLNCKSVSDTFDPFLDITLEIKTAPSVSKALEQFVKPEQLDGENAYKCTKCKKMVT
ASKRFTIHRSPNVLTLSLKRFANFTGGKITKDVKYLEYLDLRPFMSQCQGEAQIYGLYAV
LVHSGFSCHAGHYFCYIKASNGQWYQMNDSSVSVSDIRSVLNQQAYVLFYINRSSDVKKT
GNYSNFSHNPPGISGQSSPRPVVTPRAHTTTNHNSIGFIGPQLPPHMTKSAPHVNGNGSL
KDYPSSSKASSSSSSSSSSAAGKPGHAAASSSISRPTMIPDQDKRQKLSFFIGQGKQNRP
SSSSSYSQPSSASSSSSSSQSTSDARFAPHQVNHVNGTSCSNGDHPTGNGASFLVPYSQE
SSEESDQENGGTLDNGCLSKSQTKEHLVPADVCAASPKNTNSESEVHQNGSKLNGPSCGD
SKSTQNGHVYGHHKVNGHSTPEKASISNHSSSSSVVVANGLSSGHCQPNKETPESASFQA
SSSQSSPSAANESGHFPAADTRAKTLSEPLPQHTSPSTVSSPPSAPTTETHSAASKESAP
SEHPGNLTALSSEPGGCQSASGIAAPQKVSKDEDEAKDSLQTNGPSAGTEGQPENKGQIQ
SKPSPRGNERQSSPDRERDRLYSDYSRHRERHYRDRSPIRESHSDRYRYRRDHRDHYRSH
RDRLPPPERKYRDWEFEHHRQRAAPHYWDHDHDRRSYHYSHQRFDGGHERRGYPYREEPP
SRWRWDSRESRAAKDRRNAWERDGYRSKERSSSPAAHPETNKYKPSPPRARASNTDSSLW
KEEQSSEHMRKERGDSPETYRSKKHKKSKKKKKSKDKDRHHESSSDVDSDRAAEARRKKK
KKRQHRDGDSEQRSPGAARGHGSGSSEERESRKRHHADIKDPKRNGGSSPEKRRRADHAD
SSRDHAPPSHPNPTSNDSTHAYLNGHTGNGYSQTNNSSSGSKH
NT seq
3552 nt
NT seq
+upstream
nt +downstream
nt
atgaccatagttgacaggtcgtcagagaagtctgaccacgagtcagtcggatttaaccga
tcctccttcaccagcggagacgtggggatggacggcagttgttccagcagctgggcagtg
ggtcccaccaggcccagcgactctccaaggctcaagtctccaggaggctgcctgggtccg
acccccggcgccgctgtctacaacagcgcagcctcctccgtggaccggcccaaggaccaa
gttataagcagtggcgatggaatcgacttgccccagaaggtcctgttccctccagagcgg
ctcagcctaaagtgggctcaggtgcaccgtgtgggcgccggcctgcagaacatggggaac
acgtgcttcctcaactcggccctgcagtgtctcacctacactccgccgttagccaactac
atgctgtccagggagcactctaaaacatgtcacgagccgggtttctgtatgatgtgcacc
atgcaaaaccacgtcattcaggtttttgctaactctgggaatgtcattaagcccatcggt
gtactcaatgagcttaaaaggattgcaaagcacttccgctatggaagtcaggaggatgct
catgagttcctgcggtacacagtggacgctatgcaaaagtcctgcttacctggtaccaag
ttggacaggcaaacgcaggcaaccactttcattcatcaagtatttggtggctaccttagg
tccagagtgaaatgcttaaactgcaaatcagtctctgatacatttgatccttttctggat
atcactctggaaattaagacagctccgagcgtctccaaagctctggagcagtttgtaaag
cctgagcagctggatggggaaaacgcctacaagtgcaccaagtgcaaaaagatggtcaca
gcctcaaagagattcacaatccaccgcagccccaacgtgctcaccctctctctcaaacgg
ttcgcaaacttcaccggaggaaaaatcacaaaggatgttaaatatttagaatatctggac
cttcggcccttcatgtctcagtgtcaaggggaagcccagatctacgggctgtatgctgtg
ctggttcactctggattcagctgccatgctggacactacttctgctatattaaggccagc
aacggtcagtggtatcagatgaacgactcctctgtgtccgtgagcgacatccgctctgtc
ctcaaccaacaggcttatgttcttttctacatcaacagatcatctgatgtgaagaaaact
gggaactacagcaacttcagccataatccccctggcatctctggtcagtcgtctccgcgg
cctgtggtgacgccacgcgcccacaccaccaccaaccacaacagtatcggcttcatcggt
ccacagttaccaccacatatgaccaagagcgctccccacgttaatgggaatggatctctg
aaggactatcccagcagttccaaggccagcagcagcagcagcagcagcagcagcagcgca
gcaggaaaacctggccacgcagcggcttcctcctcgatcagccgacccacaatgatccca
gaccaggacaaacggcaaaagctttcatttttcatcggacagggcaaacagaaccgaccg
tcctcttcgtcctcctacagccagccgtcctctgcaagcagctcctcctcttcctcacag
tctacctcggacgctcgctttgctccgcaccaagtgaaccatgtgaacggcacgtcttgt
agtaacggggatcaccccactgggaatggagcatcgttcctggtcccctacagccaagag
tcttctgaagaatcagatcaggagaacggcggcactctggataacggctgcttatccaag
tctcaaactaaagaacatcttgtcccggcagatgtctgtgctgcttctcctaaaaataca
aacagtgaatcagaagtgcatcaaaatggaagtaaattaaatggaccaagctgtggagac
tctaaatccacccaaaatggacatgtttatggacaccataaagtgaacggacacagcact
cctgaaaaggcctccatcagtaatcacagcagttcatcctccgtggtcgttgctaatgga
ctcagcagtggtcactgtcaaccaaacaaagagacaccagagtctgcctcattccaagcc
agttcttctcagagctctccttctgctgctaatgaaagtgggcacttccctgctgcagac
acaagggctaaaacgctgtctgaacctctgcctcagcacacatcaccctccaccgttagc
tctccaccttcagccccaacgacagagacccactccgctgcatctaaagagtccgctccc
tccgagcatcctgggaacctcacggccttatcctcggagccaggcggctgtcaaagtgcc
agtgggatagctgctcctcagaaggttagcaaagacgaagatgaagcgaaggactcctta
cagaccaacggcccatcagcaggaactgaaggacaaccagaaaacaagggtcagatccag
tccaaacccagtcctagaggcaacgaaaggcagtcctctccagacagggagagagacaga
ctgtactctgactacagcagacacagagagagacactacagggacaggagtccaatacga
gaaagtcacagtgaccgttatcgctacagacgagaccaccgagatcactaccgctcgcac
cgggatcgtttgcctcctcccgagcgtaaatacagggactgggagttcgaacaccaccgg
cagcgagctgccccgcactactgggaccacgaccatgacaggcggtcctaccattacagc
caccagcgatttgacgggggccacgagcggaggggatacccctaccgcgaggagcctccc
agtcgttggaggtgggacagtcgagaatcgcgggcagcgaaggacagaaggaacgcctgg
gagagagacggttaccgctcaaaggagaggagttcctcccccgccgcacatccagaaaca
aacaagtacaagccgtcgcctccacgagctcgcgcctccaacactgactcttctctttgg
aaggaggagcagagttctgagcacatgaggaaagagaggggggacagccccgagacttac
cgctctaaaaaacataaaaaaagcaagaaaaagaagaagtcaaaagacaaagacaggcac
cacgagagcagctctgacgtggactcggacagagccgcggaggcccgcaggaagaagaag
aagaagaggcagcaccgggacggcgattcggagcagcggagtcccggcgcggcccggggc
cacggcagcggcagcagcgaggaaagggagagccgcaagcgccaccacgccgacatcaag
gaccccaaacgcaacggcggctcctctccggagaagcgccgccgcgcagaccacgccgac
agcagcagggaccacgcgcccccctcacatcccaaccccacctcaaacgattcgactcac
gcctacctgaacggacacacaggaaatggttacagccaaaccaacaactcgtccagtggc
tccaaacactga
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integrated database retrieval system
