Kryptolebias marmoratus (mangrove rivulus): 108237416
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Entry
108237416 CDS
T05608
Name
(RefSeq) probable histone deacetylase 1-B isoform X1
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr03082
ATP-dependent chromatin remodeling
kmr03083
Polycomb repressive complex
kmr04110
Cell cycle
kmr04330
Notch signaling pathway
kmr04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
108237416
03083 Polycomb repressive complex
108237416
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
108237416
04350 TGF-beta signaling pathway
108237416
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
108237416
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
kmr03036
]
108237416
Enzymes [BR:
kmr01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
108237416
Chromosome and associated proteins [BR:
kmr03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
108237416
HDAC complexes
Sin3A-HDAC complex
108237416
BRAF-HDAC complex
108237416
REST complex
108237416
SHIP complex
108237416
MiDAC complex
108237416
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
108237416
Heterochromatin formation proteins
Other heterochromatin formation proteins
108237416
Chromatin remodeling factors
NuRD complex
108237416
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
108237416
NCBI-ProteinID:
XP_017274311
UniProt:
A0A3Q3G1X9
LinkDB
All DBs
Position
LG10:16380563..16386097
Genome browser
AA seq
488 aa
AA seq
DB search
MAFTSQGTKKKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKA
SGEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSAGGSVA
GAVKLNKQQTDIAINWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHH
GDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEA
IFKPIMAKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTIKGHAKCVEYIKSFNLPLLMLG
GGGYTIRNVARCWTFETAVALDCSIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNDYL
EKIKQRLFENLRMLPHAPGVQMQAIPEDAVQEDSGDEEEDPNKRISIRAQDKRIACEEEF
SDSEDEGEGGRRNTASYKKAKRAKTEGEKEGEEKKKGEEETKDVKEEEKVPEEEKMDTSK
PKEESKTS
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atggcatttacttcccaaggaacaaagaaaaaagtttgctactactatgatggtgatgtt
gggaattattactatggtcagggccatcccatgaagccccaccgtatccgcatgacacac
aacctcctgctcaactacggcctctacagaaagatggagatatatcgtccgcacaaagcc
agcggagaagagatgaccaagtatcacagcgacgattatatcaagttcctgcgctccatc
aggccagacaacatgtcagaatacagcaaacagatgcagagatttaatgtaggagaggac
tgtccagtgtttgatggtttatttgagttctgccagctctcagctgggggctcagttgcc
ggtgctgtgaagttgaacaagcagcagacagacattgcaatcaactgggccggaggtctg
catcacgccaagaagtcagaggcctcggggttctgctacgtcaacgacatcgtcctggct
attctggagttactgaaataccaccagagagttctgtacattgatattgacatccatcat
ggagatggtgtggaggaggctttctacaccactgatcgtgtcatgactgtgtctttccac
aagtatggagagtacttcccaggcactggtgaccttagggacattggtgctggcaagggc
aaatattatgctgtgaattatccactgagggacgggattgacgacgagtcctatgaagcc
atattcaaacctatcatggccaaggtgatggagatgtatcagcccagtgcagtggtcctc
cagtgtggagctgactctctgtccggggacaggctcggctgcttcaacctcaccatcaaa
ggccatgccaagtgtgtggagtacataaagagcttcaacctgccgctgctgatgctgggc
ggaggcggttataccatccgcaacgtggcacgctgctggactttcgagactgctgtggcc
ctcgactgctccatccctaacgagcttccatacaatgactactttgagtacttcggacct
gacttcaagttgcacatcagcccttccaacatgactaatcagaacaccaacgactacctg
gagaagatcaagcagcgcttgtttgaaaacctgcgaatgttgcctcacgcccctggagtt
cagatgcaagccatcccagaagacgccgtgcaggaggacagtggagacgaggaggaagat
cccaacaagcgcatatcgattcgcgctcaggacaaaaggatagcatgtgaggaagagttc
tccgactccgaggatgaaggggaaggaggccgcaggaatacagccagctacaagaaagcc
aagcgagccaaaaccgaaggagagaaggagggagaagagaagaagaaaggtgaggaggaa
acaaaagatgtaaaagaagaggagaaggtgccagaggaggagaaaatggacacatcaaag
ccaaaagaggagtccaagacatcttga
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integrated database retrieval system
