Kryptolebias marmoratus (mangrove rivulus): 108237759
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Entry
108237759 CDS
T05608
Symbol
ddx42
Name
(RefSeq) ATP-dependent RNA helicase DDX42 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108237759 (ddx42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
kmr03041
]
108237759 (ddx42)
Enzymes [BR:
kmr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108237759 (ddx42)
Spliceosome [BR:
kmr03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
108237759 (ddx42)
Complex B
108237759 (ddx42)
Complex C
U2 SnRNP specific factors
108237759 (ddx42)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
108237759
NCBI-ProteinID:
XP_017274899
UniProt:
A0A3Q3A9R3
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All DBs
Position
LG12:3576169..3582995
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AA seq
909 aa
AA seq
DB search
MNWNKGGPGVKRGFGFGGFSLEGKKEEPQLPQKSHTSFGAPGSSGGYGKNQQLPSFYKIG
TKRANFDEENAYFEDDEEESSSNMDLPYIPAENSPTRQQMQSGGGSDSEDDPLDAFMAEV
ENQAAKDMKKLEESKKKASKGIRDDIEEEDEQEAYFRYMAENPTAGLTQEEEEENIDYDS
DGNPIPSTTKKIILPLPPIDHSEIDYPPFEKNFYNEHEELSSLTGLQVLELRQKLNLRVS
GAAPPKPCTSFAHFGFNEQLMHQIRKSEYTQPTPIQCQGVPIALSGRDMIGIAKTGSGKT
AAFIWPMLVHIMDQKELEPGEGPIAVIVCPTRELCQQIHAECKRFGKAYSLRSVAVYGGG
SMWEQAKALQEGAEIVVCTPGRLIDHVKKKATSLQRVTYLVFDEADRMFDMGFEYQVRSI
ASHVRPDRQTLLFSATFRKKIERLARDILIDPIRVVQGDIGEANEDVTQVVELLPSGSEK
WPWLTRRLVEFTSSGSVLIFVTKKANSEELATNLQQEGYSLGLLHGDMDQSERNKVISDF
KKKNLPVLVATDVAARGLDIPSIRTVVNYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTN
KDTSFAGDLVRNMEGANQAVSKELMDLAMQNPWFRKSRFKGGKGKKLNIGGGGLGYKERP
GLGAESSDRSSSSSSSSLLSSTSSYESYSKPTTGAMGDRMSALKQAFQAQYKSHFVAATS
GPPKLSTKSNSSSGWTSAGSLNSVPTEPANGSERPSMGSFSMAGFTSAGSLSSVPTSQTS
PQPSVPPPASPSQRDSSRDRHGEGRHGDGHHRHSDRSDRSDRSDRHGGDDHHRDRDRHGD
RDRDRHGDRERHSSRHSDSRNGDGSRRSKEDRRSDRDGGDKGGGEGRDRGDDSFAVPDPP
KRRKSRWDN
NT seq
2730 nt
NT seq
+upstream
nt +downstream
nt
atgaactggaacaaaggtggtccgggtgtgaagcgtgggtttggctttggagggttttcc
cttgaagggaagaaagaggagcctcagcttccccagaaatcgcacacatcattcggagct
ccaggatcaagcggtggatacgggaagaaccagcagcttccgtcgttctacaaaataggg
acaaaaagagctaattttgatgaggaaaatgcgtattttgaagatgacgaggaggagtcc
agcagcaacatggatcttccttacattccagctgagaactcccccacacggcagcagatg
cagtcgggtggaggctcagacagcgaagatgaccctttagatgccttcatggcagaggtt
gagaatcaagctgccaaagacatgaagaaactagaagaaagtaagaaaaaggcatccaag
ggtattcgtgatgacattgaagaagaagatgaacaagaagcctatttccgctacatggca
gagaatccgacagctgggttgacccaagaagaagaggaggaaaacattgactatgacagt
gatggaaatccgattccctccacgaccaagaaaatcatcctgccacttcctcctattgac
cactcagagatagattatccgccgtttgagaagaacttttacaacgagcacgaggagctc
agcagcctcactggacttcaggtgttggaattaaggcagaaactgaacctgcgagtatcc
ggtgctgcacctccaaaaccttgcaccagttttgctcactttggctttaatgagcagctg
atgcatcaaatccgaaagtcggagtacacccagcccacaccaattcagtgtcagggtgtc
cctatcgctctgtctggacgtgacatgattggcatcgctaaaaccggcagcggtaaaact
gcagccttcatctggccgatgctggttcacatcatggaccagaaggagctggaacctgga
gagggacccattgctgtcatcgtgtgtcccaccagagagctttgtcagcagatccacgca
gaatgtaagcgtttcgggaaagcctactccctgcgctctgtagctgtttatggaggagga
agtatgtgggaacaggccaaggctctgcaggagggagcagagattgtggtgtgcacacca
ggtcgtctgattgaccatgttaaaaagaaggctacatccttgcaaagagtgacgtacctg
gtgtttgatgaggcggatcgcatgtttgatatgggctttgaatatcaagttcgatcgatc
gccagccacgttcgccctgacaggcagactcttctgttcagcgccacctttcgaaagaag
atcgagaggttggcgagggacattttgatcgatcctattcgtgtggtgcaaggtgacatc
ggcgaggccaatgaggatgtgactcaggtggtggagctgctgcccagcggctcagaaaag
tggccgtggctgacccggcgcttggtcgagttcacctcctccggctccgtcctcattttt
gtcaccaagaaggcgaacagcgaggaactggccactaacctgcagcaggagggctacagc
ctgggcctcctgcacggagacatggaccagagtgagagaaacaaggtcatcagcgacttc
aagaagaagaatttgcccgttctggttgccactgatgtagctgctcgtggtctggacatc
ccgtccattcgcacggtggtgaactacgatgtggcgcgggacatcgacacacacactcac
cggatcggtcgaacgggtcgtgccggggagaaaggcgtggcctacaccctcctcactaac
aaagacacctctttcgctggagacctggtgcgaaacatggagggagccaatcaggccgtt
tccaaagagctcatggatttagccatgcagaatccctggttcaggaagtcccgatttaag
ggcggtaaagggaagaagctgaacattggaggaggtggtctcggttacaaagagagaccg
ggtctgggggctgaaagctctgatcgtagcagcagcagcagcagcagcagcttgttgtca
tctactagtagctatgaaagctacagcaaacctacaactggggcgatgggggatcgcatg
tctgcgctgaaacaagccttccaggctcagtataaaagccactttgtggctgccaccagc
ggccctccaaagctcagcaccaaatctaacagctcctccggctggacgagtgccggcagc
ctgaactccgtgccaacagagcctgccaatggctccgagcgacccagcatgggctctttt
tcaatggccggtttcaccagtgccggctccctgagctccgtgcccaccagccagaccagc
ccgcagccgagcgtcccgccacctgcgtctccctcacagagagacagctcacgggacaga
cacggggagggacggcacggagacggtcaccatcgccacagcgacaggagcgacaggagc
gaccggagcgaccggcatggtggggatgatcaccacagagaccgggatcgccacggggac
agagatcgggaccgccacggggaccgggagcgccacagcagccgtcacagcgacagtcgt
aacggtgacggaagcagaaggagcaaagaagaccggaggagtgatagggatggaggagac
aaggggggtggagaggggagggacagaggagatgatagctttgccgttcctgatccacca
aaacgtagaaaaagccgatgggacaactaa
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