Kryptolebias marmoratus (mangrove rivulus): 108238092
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Entry
108238092 CDS
T05608
Symbol
ddx46
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108238092 (ddx46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
kmr03041
]
108238092 (ddx46)
Enzymes [BR:
kmr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108238092 (ddx46)
Spliceosome [BR:
kmr03041
]
Complex A
U2 snRNP components
U2 related factors
108238092 (ddx46)
Complex B
108238092 (ddx46)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
108238092
NCBI-ProteinID:
XP_017275432
UniProt:
A0A3Q3B9F7
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All DBs
Position
LG13:complement(5547045..5558099)
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AA seq
1062 aa
AA seq
DB search
MGRESRHYRKRSASRGRSGTRSKSRSPEKRSKKDDRDRSRRDRSRSRDRRRSRSRDRKRA
RRSRSRDRRRSRSRDRKRSRSRSRTRRSRTASPAKSKKTDEKSKSKEKDNLHPISDNKKV
KEEKEDEKVEDQDFDQNKLEEEMRKRKERVEKWREEQRKKAIENIGEIKKELEEMKQGKK
WSLEDDDDDDEDGSAVMEVDDEEEVDGKGAEGKENDAEEVKKEESEKEKETPVEQQAEED
EVDPLDAYMEEVKQEVKKFNIGAMKGNDKKGAMTVTKVVTVVKTKKLPHTHKKKGELMEN
DQDAMEYSSEEEEVDLQTALTGFQTKQRKILEPVDHGKIQYEPYRKNFYVEVPELAKMTP
EEVNSFRLELEGITVKGKGCTKPIKTWVQCGVSMKILSSLKKHGYEKPTPIQAQAIPAIM
SGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRPLEESEGPISVIMTPTRELALQITKECKK
FSKPLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLGANSGRVTNLRRVTYVV
LDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILLKPIEVQVGGRS
VVCSDVEQHVLVIEEDKKFLKLLEILGHYQEKGSVIIFVDKQEHADALLKDLMKASYPCM
SLHGGIDQYDRDSIINDFKNGACRLMVATSVAARGLDVKQLILVVNYNCPNHYEDYVHRA
GRTGRAGNKGYAYTFITEDQVRYAGDIIKALELSGSPVPPELEQLWASFKDQQKAEGKTI
KSSSGFSGKGFKFDETEHALANERKKLQKAALGLQDSDDEDGALDIEEQIESMFNSKKRV
KDLSAPGSSAGQAGAVAPTAAAPGGLPGVAPASAGNIQKLEMAKRLALKINAQKNLGAEA
QDVMQQATNAILRGGPIVTPSVSAKTIAEQLAEKINAKLNYTPVEKLEEERQAAEQAETV
RRYEEELEINDFPQTARWKVTSKEALQRIGEYSEAAITIRGTYFPPGKEPKEGERKIYLA
IESASELAVQKAKTEITRLIKEELIRLQNSYQPTSKGRYKVL
NT seq
3189 nt
NT seq
+upstream
nt +downstream
nt
atgggacgtgaatcgagacactacaggaagcgttcggcgtcccggggccggtcgggcacc
aggtcaaagagtcgctccccggagaaacgctccaagaaagacgaccgagaccgaagcagg
agagacaggtcccggagccgagaccggcgcaggtcccggtccagagacaggaaaagagcc
aggcggtccaggagcagagacaggagaagatccagaagccgcgacaggaagaggtcccgg
agcaggagtcgaacccgcaggtctcgtactgccagcccagcaaagagcaagaaaactgat
gaaaagtcaaagagcaaagagaaagacaaccttcatcccatctctgacaacaaaaaggtt
aaagaggagaaagaagatgagaaggtcgaggatcaagacttcgaccagaacaagctggag
gaggagatgaggaagaggaaggagcgggtggagaaatggagggaggagcagaggaagaag
gccattgaaaacatcggggagatcaagaaagaactggaggaaatgaagcagggcaagaaa
tggagcctcgaggatgacgatgacgacgatgaggatggttcggccgtgatggaggtagac
gacgaggaagaagtggacggaaagggggcggaggggaaggagaacgacgcggaggaggtg
aagaaggaggagagtgagaaggagaaggagactcccgtggagcagcaggccgaggaggac
gaagtggatcctctggatgcctacatggaggaagtcaaacaggaggtgaagaagttcaac
atcggagccatgaaaggaaacgacaagaaaggggcaatgactgtaactaaagtggtgacg
gtcgtcaaaaccaagaagttgcctcacacacacaagaagaagggcgagctgatggagaat
gaccaggatgccatggagtactcgtcagaggaggaggaggtggacctgcagacggctctg
acgggcttccagaccaagcagaggaagattctcgagcccgtcgaccacgggaagatccag
tacgagccgtaccgcaagaacttctacgtggaggttcctgaactggccaagatgacccca
gaggaagtgaactccttcaggttggagctggaaggaattaccgtcaaagggaagggttgt
accaagcccatcaagacctgggtccagtgcggggtgtcgatgaagatcctttcctctctg
aagaaacacggctacgagaagcccacgccgattcaggctcaggccatccccgccatcatg
tcgggtcgggacctcatcggcatcgctaagaccggcagcgggaagaccatcgctttcctg
ctgcccatgttccgacacatcatggaccagaggccgctggaggaatccgagggacccatc
tctgtgattatgactccgaccagagagttggctctgcagatcacaaaggagtgcaagaag
ttctccaagccgctgggactcagggtggtgtgtgtttacggaggcacgggaatcagcgaa
cagattgctgagctgaaaagaggagctgagatcatcgtctgcacgccggggcgaatgatc
gacatgctgggggccaacagcggccgggtcaccaacctgcgcagagttacatacgtggtg
ctggacgaagcagacaggatgtttgacatgggcttcgagccgcaggtgatgcgcattgtg
gacaacgtgcgtccggaccggcagacggtcatgttctcggccaccttccccagagccatg
gaggcgctggcccgcaggatcctgttgaagcccatcgaggtgcaggtgggagggcgcagt
gtggtctgctccgacgtggagcaacacgtgctggtgatcgaagaggacaagaagttcctg
aagctgctggagattttgggtcactaccaggagaagggatccgtcatcatctttgtggac
aaacaggagcatgcagacgctctgctcaaagacctgatgaaagcctcgtacccctgcatg
tccttacacggaggaatcgaccagtacgacagagacagcatcatcaacgattttaagaat
ggagcctgtcgcctgatggtggccacctctgtggcggcgcgaggtttggatgtcaagcag
ctgatcctggtggtcaactacaactgccccaaccactatgaggactatgtccatcgggcg
ggacgcacaggcagagcgggcaacaagggctacgcctacaccttcatcactgaggatcag
gttcgttacgccggagatatcatcaaggccttggagctgtccggatctcctgtcccccca
gaactggagcagctttgggcctccttcaaggaccagcaaaaagcggagggtaaaaccatc
aagagcagcagtgggttctcgggtaaaggctttaagtttgatgagactgaacacgctttg
gccaacgagagaaagaagctgcagaaagctgcgcttggattgcaggactctgatgatgag
gacggagccttggatattgaggagcaaattgaaagcatgtttaactccaaaaagagggtg
aaggacctgtctgctcctggatcgtccgccggtcaagccggagctgtcgctccaacagca
gctgcgcccggaggacttcctggcgtcgcgccggcgtctgccgggaacatccagaagctg
gagatggccaaaagactggctctgaagatcaacgctcagaagaacctgggcgccgaggct
caggacgtgatgcagcaagccaccaacgccatcctgcgcggcggccccatcgtgacgcca
tccgtgtcagccaagaccatcgcggagcagctggcagagaagatcaacgcgaagctgaac
tacacgcccgtggagaagctagaggaggagcggcaggcggccgagcaggctgagactgtc
cggagatacgaagaggagctggagattaacgacttccctcagacggccaggtggaaggtg
acgtctaaagaggctttgcagaggattggtgaatactctgaagctgccatcaccatcagg
gggacttatttccctcccggcaaggagcctaaggagggagaacgcaaaatctacctggct
atcgagagcgcaagcgagctggctgtgcagaaagccaaaacggagattacacgactaatc
aaggaagagctcatccgattacaaaactcctaccagccaacaagcaaaggcagatacaaa
gtgttgtag
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