Kryptolebias marmoratus (mangrove rivulus): 108238533
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Entry
108238533 CDS
T05608
Name
(RefSeq) LOW QUALITY PROTEIN: polycystic kidney disease protein 1-like 2
KO
K04988
polycystin 1L2
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
kmr04040
]
108238533
Ion channels [BR:
kmr04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
108238533
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Polycystin_dom
PKD_channel
PLAT
Ion_trans
GPS
Motif
Other DBs
NCBI-GeneID:
108238533
NCBI-ProteinID:
XP_037831833
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Position
LG6:4920874..4952102
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AA seq
1888 aa
AA seq
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MGTKSICVTLTPQLDTTNQVRLNCFDDCNPVRTNKDAKYKIICNQTLCSDVVWYIEDIRD
ENKWDNEAKDCYEDAQKIPLTKKGDNDVYKVKKEDLSDVKNQNKSITVVVIYTKNSSLFY
KTDTINASSISTDRPDPTSENEKPTQNDTSADNTSPEGPTKTPSGSSSAAVTSAASTTSE
TTTREPEDLMCSISPNSGTVFDAFKIKCTTKSPCSRCLYCFSAKDKRLRCSKDSEVKAVY
LPQGDSSSNYNLLITATAKKFHTFFKTTLTVQVMDFSSNSNSTDGLKTGVKNAVDQLKKE
GLLSGETVGEIVNTVAQKLNDPDDESSKEDRQKIREEILGTLIDTVNEVPPSAPGEIQVI
ARGLTSLIEKGDELSLDAQVSASTLFANLSLSIVHMNVSTAEEKEEMLTAASTIVEGVSN
ILEYSSSKNISDVLLDTLTNTQSALLNIKETNEGPTIIIQPHISLYVSRVTPERLNSSFI
SVANSSSPTFGLPELPSSIFPSGEPVDVRMLSLDKNPFSWNERGNISGLIGALSLTTKDG
SGIPVENLSEDIEILLPRPDGEQANTSVLDLGNYSTTAIDIPSADSTLLLKMVPSEDPLP
FKLFLGYMNYPTETNYVAMTDMPQKGTTQEERYTWILSPTNLKRNTGIHYLVVRPIVGPG
IKSINATLSITPITSSCKFWNETKLDWSDYGCRVGVKSTQLLTQCLCNHLTFFGSSFFVT
PNLVDPSRTAELFATFAENPVVVCFVGALFVTYLLVVVWARRKDIQDTVKLKGTVLEDND
PMDNYRYLLCVCTGHRIGASTSSQVIVTLLGEQGNSKPHHLTDPKKPVFERGAVDLFLLT
TPYSLGELEGIRLWHNNSGRHPAWFVGNVMVQDLQTEQKWYFLCSSWLAIDMGDCCLDKL
FPVSTEMDLKKFSNLFFMKTVKDFNDGHLWYSVINRPPSSTFTCVQRVSCCFSLLLCTML
TSIMFYGIPTDPSDQVMDLGHFEFTWQQFMVGVQSSLIMFPINILIVSIFRNTRPREAPC
CQRKTKKTKSLQHESTLQSVSSQMATNTNGNVSLDIIIKDITRIVHSLPETAKSNIPFTE
SEFGPGKGTDINGILSEVEDFLKQNYKTSDSTHSNXLKLSESLFYCAVKIRAYLCPVPTG
EGIQKKSNKTQHLYRQMCHLEKKLNLLGPSCFPNPKSYSQALQQVQSMKSFLEDHFSITS
HVNQNEHDKPAAGISGDNGQKKRVRRHGVLPWWFIFVGWLLVIATSVISGYFTMLYGLKF
GKERSVSWLVSMLVSFFQSLLLIQPLKVICLAVFFALIIKKVDEEDFQDVAFEKAEKHPG
ENNQTMSRWADCLYEPPPPADIEKMKRNKIMEQKVFALLTEILTYLGFMWMLLLVAYSQR
DPNAFLLNQHIRNSFTGDIPDTMSLQDVFTWANTSLLPNLFGEYPGFITDGNSKLVGNAR
LRQLRVQRNMCQIAGVMLTLVPDCDAPYSWEVEDMGSYELGWNHSVTDNVSASASSPWKY
QTQAKLRTLPFWGRLALYRGGGFLADLGPDFLNASRTLEYLFRNKWLDMYTRAIFVEFTV
YNANVNLFCIVTFLMETSSAGAFLFHSELQSVRLYASTGGLYFFVMASEIIYMLFILYYM
FQQGKLMKQQHLNYFKNKWNLLELSIILLSWSAVAVFIKRTLIGNRDMTYYQNNKEQFAS
FHETATADFTLQYLIAFLVLLSTIKLWHLLRLNPKMNLITAALQRAWSDILNFLVIIVIM
LVAYSIASNLIYGWKLYSYRTFTDSLLTVISLQMGIFNYEEVLDSQPFLGGILFGSCIIL
MTFTVLNLLISVILVALNEEQIHHKPSEEEEIVNLLLNKICNFFGVRYKSENESAGLEES
GNSGLTLNNSRDFLSPSADVNIYHKSDK
NT seq
5667 nt
NT seq
+upstream
nt +downstream
nt
atgggtacaaaatctatatgtgtcaccctcacgccgcagttagacacaacaaatcaagta
cgtctcaattgctttgatgactgtaacccagtaagaacaaacaaggatgcaaaatacaaa
ataatctgcaatcaaacgttgtgctcagatgttgtgtggtacatcgaggacataagagat
gagaacaaatgggacaatgaggcaaaagattgctacgaagatgcacagaaaattcctcta
actaaaaagggtgataacgatgtctataaagtgaaaaaagaagacctttcagatgtcaaa
aaccagaataaaagtattactgttgtggtaatctataccaaaaacagcagtctgttttac
aaaaccgataccataaacgcatcatcgatatctacggatagaccagatcctaccagcgaa
aacgagaaaccaacacaaaatgacaccagcgcagacaataccagccctgaaggccccacc
aagacaccatctggctccagcagcgctgctgttacttctgctgcttcaacaacttcagag
acgaccaccagggaacctgaagacctcatgtgctccatatcaccaaacagtggaacagtt
tttgatgctttcaagataaaatgtacaacaaaatcgccttgttctcgctgtctgtattgt
tttagtgctaaggacaaacgtctgcgctgcagtaaggacagcgaagtcaaggctgtgtac
cttcctcaaggtgacagcagttcaaactacaacctgctcatcacagcaactgcaaaaaaa
ttccatactttctttaaaaccactctaactgtacaggttatggatttctcatcaaactcg
aattcaacggatggtctcaaaacgggtgtaaagaatgctgtggatcagctgaagaaagaa
ggcctactgtctggagaaacagtgggagagatcgtcaacactgtggcccaaaaactgaac
gatccagatgacgaatcaagcaaagaagatcggcaaaagatcagagaggagattctgggc
acattgattgacacagtaaatgaagttccacccagcgctccaggagaaattcaggtgata
gccagaggactcacttctcttatcgagaaaggagatgaactcagtttggatgctcaggtt
tctgcctccacattgtttgcaaacctcagcttatccatcgtgcacatgaacgtgagcaca
gctgaagagaaagaagaaatgctcactgcagccagcaccattgtggagggagtgagcaac
atcttggagtattcttccagtaaaaacatctctgatgttcttcttgatactctaaccaac
acacagagtgcattgttgaacataaaggagacaaatgaggggccaactataattatacaa
ccccacatcagtttatacgtcagtagagtgacaccagagagattaaactcgagttttata
agtgttgccaacagttcttctcccacatttggtctgccagaactgccttcaagcatattt
ccttcaggagaaccagtggatgttcgaatgctgagtttagataaaaacccattttcctgg
aatgagagaggcaatatcagtggactaataggcgctctgtcgctcacaacaaaagatgga
tccggtatccctgtggagaacttaagtgaagatattgagattctgttgccaagacctgac
ggagaacaagcgaacacctctgttttggatctggggaactacagcacaacggccatagat
attccttcagctgacagtaccctgcttttaaagatggtgccctcagaggatcctttaccc
ttcaaactgtttcttggttatatgaattaccccacagagacaaattatgtagcgatgaca
gatatgcctcaaaagggaactacacaagaggaacgatacacatggattctcagtcctaca
aatttaaaaagaaacactggaatccattatcttgtggtgaggcctattgtgggtccaggc
ataaaatctattaatgccactttatcaattacccccatcacatcttcatgcaaattctgg
aatgaaacaaagttggactggagtgactatggttgcagagttggcgtgaagtccacacag
ttactcacccagtgcctctgcaaccacctcacgttttttgggagctctttctttgtgact
cccaatcttgtcgacccatcacgcaccgctgagcttttcgcaacctttgctgagaatcca
gtggtagtgtgctttgttggcgcactctttgtgacctatcttcttgtggttgtgtgggca
cggagaaaagacattcaagacacggtcaagttgaagggaacagtgcttgaggacaatgac
cccatggacaactatcgctatctgttgtgtgtgtgcactgggcatcggataggagcttcc
acttcctctcaggttatagtcactcttctgggtgaacaaggaaacagtaagccccaccac
ctgaccgacccaaagaagccggtgtttgagaggggggcggtggatttgtttctgctaacg
acgccctactccttgggagagctggaggggatcagactgtggcacaacaactcaggacgt
caccctgcttggtttgtaggcaatgttatggtccaggatttacagacagagcagaaatgg
tattttctgtgcagttcctggcttgcgatagacatgggtgattgctgcctcgataaactc
tttcctgtttcaacagaaatggatctgaagaaattcagtaacttgttctttatgaagaca
gtaaaggatttcaatgatggacacctctggtactctgtgattaatcgacctccaagcagc
acctttacttgtgtacagagagtgtcctgctgtttctccctgctgctgtgcaccatgctg
accagcatcatgttttatggcatccccacagacccctctgatcaggtcatggacttgggt
cactttgagtttacctggcagcagttcatggttggagtccagagttccctcattatgttt
ccaataaatatcctcatagttagcatcttcagaaacactcgtcctcgggaggcgccttgt
tgccagagaaaaacaaagaaaacaaagagccttcaacacgagagcactttgcagtctgtt
tcctcccaaatggctacaaacactaatggaaacgtcagtttagatattattataaaggat
ataacaagaattgtccattcactccctgagacagccaaaagcaacatcccatttactgag
tctgagtttggacctggaaaaggaaccgatatcaatggcatcctctctgaggttgaagac
tttctcaaacagaattacaaaaccagtgacagcacccactcaaactgactaaagctgtca
gaaagtttgttctactgcgctgttaagatcagagcttatttgtgtcctgtgccaacaggg
gaggggatccaaaagaaaagcaataaaacccagcatctctacaggcaaatgtgtcacctt
gaaaagaagttaaatcttctgggcccctcttgcttccccaacccaaagagctacagtcag
gctctgcagcaggtccagagcatgaagagcttccttgaagatcacttctcaataaccagc
catgtcaaccaaaatgaacatgacaagccagcagctggcatttctggtgacaatggccag
aaaaagagagtgcgtcgacatggagtactgccctggtggtttatctttgttggttggctg
ctggtgattgcaaccagtgtcatatccgggtattttacaatgctttatgggttgaaattt
ggaaaagaacgctccgtaagttggttggtgtccatgctcgtctccttctttcagagtctt
ctcttaattcagccactgaaggtgatatgtctcgcagtcttcttcgcattgataataaag
aaagttgacgaggaagattttcaagatgtggcattcgaaaaagctgaaaaacatccaggt
gaaaacaaccaaacaatgagcagatgggctgactgtctgtacgagccacctccacccgca
gacattgagaaaatgaaaagaaacaagattatggaacagaaggtgtttgctctcctcact
gagatattaacctacctgggcttcatgtggatgctgctgctggttgcttatagccaaaga
gatcccaatgctttcttgctgaatcagcacattaggaatagcttcactggagacatccca
gacaccatgagtcttcaggatgtgttcacatgggccaacacctctctgctcccaaacctg
tttggagaatatccaggatttatcacagatggaaactccaagctggtgggtaatgcccgt
cttcgtcagctgagagtgcagaggaacatgtgtcagattgccggcgtcatgcttacatta
gtgcccgactgcgatgctccatattcatgggaggtggaggacatggggtcctacgaactg
ggctggaaccactctgtgacagataatgtttctgcaagcgcatccagtccgtggaagtac
cagacacaagctaagctcaggactctgcctttctggggcagactggcgctctacagggga
ggtggcttcctagcggatctcggccctgattttctaaatgccagtcgcactcttgagtat
cttttcagaaataaatggctggatatgtacacaagggcaatctttgttgagttcactgtt
tataatgccaacgtgaacctcttctgtatcgtcacattcttgatggagacctcatctgca
ggagcttttttgttccacagtgagctgcagagtgtccgactttacgcatcaacaggcggt
ctttacttcttcgtcatggcctctgagattatttatatgctcttcatcctttattacatg
tttcagcaggggaaactgatgaaacagcagcatttgaattacttcaagaacaagtggaac
ctcctggagctgagcatcatcctgctgagctggagcgctgtggccgtttttatcaagagg
accctgattggaaaccgtgacatgacttactaccaaaacaacaaagaacaatttgccagt
tttcatgagacggccaccgctgactttacgcttcagtatctgatcgccttcctggtcctt
ctttccaccatcaaactgtggcaccttctcagactgaaccccaagatgaacctgatcacc
gcagcactgcagcgagcctggagtgacatcttaaactttcttgtgatcattgtgatcatg
ttagtggcgtactccattgcaagcaacctgatttacggatggaagctttactcttacaga
actttcacagattcccttctgaccgtcatcagtttgcagatgggcatttttaactatgag
gaggtcttggacagtcagccatttctcggtggaatactctttggttcctgtattatcttg
atgacatttacggttctcaatctcctcatttctgtgattctcgtagctctaaatgaggag
cagattcaccacaagccctcagaagaggaagagattgtcaacctcctgctgaacaaaatc
tgcaacttctttggcgtcagatataaaagcgagaacgagtctgcggggcttgaggagagc
gggaacagtggcctgaccctcaataacagcagagatttcctcagcccctcagctgatgtc
aacatttatcacaaatctgacaagtga
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