Kryptolebias marmoratus (mangrove rivulus): 108238573
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Entry
108238573 CDS
T05608
Symbol
cop1
Name
(RefSeq) E3 ubiquitin-protein ligase COP1 isoform X1
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr04115
p53 signaling pathway
kmr04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
108238573 (cop1)
09140 Cellular Processes
09143 Cell growth and death
04115 p53 signaling pathway
108238573 (cop1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
kmr04121
]
108238573 (cop1)
Enzymes [BR:
kmr01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108238573 (cop1)
Ubiquitin system [BR:
kmr04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
108238573 (cop1)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
108238573 (cop1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
Beta-prop_EML_2
WDR55
Beta-prop_EIPR1
Beta-prop_RIG_2nd
zf-C3HC4_2
EIF3I
Beta-prop_TEP1_C
Beta-prop_WDR19_1st
zf-C3HC4
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
zf-RING_2
Beta-prop_EML
Beta-prop_DCAF4
zf-RING_UBOX
zf-C3HC4_4
Beta-prop_WDR90_POC16_2nd
zf-C3HC4_3
zf-RING_5
RING_XB3-XBAT31
WD40_RFWD3
Beta-prop_WDR35_TULP_N
WD40_like
Beta-prop_Vps41
Beta-prop_IFT140_1st
Beta-prop_DCAF12
Beta-prop_IFT122_1st
Beta-prop_NUP159_NUP214
zf-rbx1
WDR90_beta-prop_4th
zf-RING_10
Beta-prop_SPT8
UvrD-helicase
zf_C2H2_10
CREPT
Motif
Other DBs
NCBI-GeneID:
108238573
NCBI-ProteinID:
XP_017276256
UniProt:
A0A3Q3H0Q5
LinkDB
All DBs
Position
LG20:16413116..16423887
Genome browser
AA seq
708 aa
AA seq
DB search
MSSNRPQQSGGGASSVPSTSSSSGGGTGGSGSTAVTSNGNSSGNVVPSSRTLAATGEGGL
SVPTVPAVSSSRGGLASLSRPTSSAGSRKRSLHQAPLYNGLLNSYEDKSNDFVCPICFEM
IEEAHMTKCGHSFCFKCIRQSLEDSNRCPKCNYIVDNVDQLYPNFLVNELILKQKQRSEE
KRLKLDPPNWSRWQVFQDILNPDQENLDLANVNLMLELLVQKKKQLEAESQAAQRQILME
FLKEARRNKREQLDQLQKELNFLEEDIKRVEEMSGLYSPIIEAECTVPNVEAPSPAPSCS
SIIEPPDYNQPPGFGSTTPGKRQTWYNSTLASRRKRLTAHFEDLEQCYFSNKMSRITDEG
RNLNQLDDFMECLSKFTRYNTVRPLATLSYASDLYNGSSIVSSIEFDRDCDYFAIAGVTK
KIKVFEYGTVIQDAVDIHYPVNEMTCNSKISCISWSSYHKNLLASSDYEGTVILWDGFTG
QRSKVYQEHEKRCWSVDFNLMDPKLLASGSDDAKVKLWSTNLDNSVASIEAKANVCCVKF
SPTSRYHLAFGCADHCVHYYDLRNTKQPIMVFKGHRKAVSYAKFVNGEEIVSASTDSQLK
LWNVNKPHCLRSFKGHINEKNFVGLASNGDYVACGSENNSLYLYYKGLSKTLLTFKFDTV
KSVLDKDKKEDDTNEFVSAVCWRALPDGESNVLIAANSQGTIKVLELV
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagcaaccggccgcagcaaagcggtggcggggcaagttcggtgccgagcaccagc
agcagcagcggcggcggcacaggaggcagtgggagcaccgccgtaactagtaatgggaac
tcgtcgggaaatgttgtgccctcctcccggactctggcagcaaccggcgagggaggcttg
tccgtgcccactgtgcccgcggtgtcgtcgtcccggggcgggttggcttccctgagcaga
ccgacatcgtccgcgggcagcaggaagaggtccctccatcaagcacctttgtacaacggc
ctcctgaattcatacgaagataaaagcaacgactttgtctgtccaatttgcttcgaaatg
atagaggaagcacacatgacaaagtgtggccacagtttttgtttcaagtgtattcgccag
agtttggaggacagcaacagatgtcccaagtgtaactatattgttgataacgtggatcag
ctgtacccaaactttctcgtaaatgaactgatccttaaacagaaacaaaggtcagaggag
aagagactgaaattagatcctcctaattggtctcggtggcaggtcttccaggatattttg
aatcctgaccaggagaacttggaccttgcgaacgtcaatctgatgttggagcttctcgtt
cagaagaagaagcagctggaggcggaatcccaagcggctcagagacagatcctcatggag
tttctgaaagaagccaggagaaacaagagagagcaactagaccaactacagaaagagctc
aacttccttgaagaggacattaaacgtgttgaggaaatgagtgggctctactccccaata
atagaggcagagtgcacggtgcctaacgtcgaggctccctctccagcgcccagctgcagt
agcatcatcgagccaccagattacaaccagcctccagggttcggctcaacaaccccggga
aagcggcagacctggtacaacagcacgctggcgtcgagaagaaagagactgacggctcat
ttcgaggatctggagcagtgctacttctctaacaagatgtcacgcatcacagatgaaggc
aggaacctgaaccagctggatgatttcatggagtgtttgtctaaattcactcgctacaac
actgtgcggccactggccaccctctcctacgccagtgacctttacaacggctccagtatt
gtctctagtatcgagttcgaccgcgattgcgactactttgctatcgctggcgtgaccaag
aagatcaaggtttttgagtacgggactgtcatccaggacgcggtggacatccactaccct
gtcaacgaaatgacctgcaattccaaaatcagctgtatcagctggagcagttatcacaag
aaccttctggccagcagcgattatgaaggcaccgtcatcttgtgggatggcttcaccggg
cagaggtccaaagtctaccaggaacatgaaaaaagatgttggagcgtggactttaatctg
atggaccccaagctcttagcctctggttccgacgatgctaaagttaagttgtggtcaacc
aatcttgacaactcagtggctagcatcgaggctaaagctaacgtctgctgtgttaaattc
agcccgacctccagatatcatctggccttcggctgtgcggaccactgcgtccactactat
gatctccgcaacactaagcagccaatcatggtgttcaaaggccacaggaaggccgtgtcc
tacgccaagtttgtaaacggagaggagatcgtttccgcgtcgacagatagccagctgaag
ttgtggaacgtcaacaaacctcactgcctgcgctccttcaagggccacatcaatgagaag
aactttgttgggctggcgtccaacggggactatgttgcctgcggcagtgagaacaactcc
ttgtatctgtactacaaaggactttccaagacactgttgacattcaagtttgacacagta
aagagtgtcctggacaaagacaagaaggaggatgacaccaacgagttcgtcagtgccgtc
tgctggagggcgctgcccgacggagagtcaaacgttctcatcgctgcaaacagtcaagga
acaatcaaggtacttgagcttgtctga
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