KEGG   Kryptolebias marmoratus (mangrove rivulus): 108238573
Entry
108238573         CDS       T05608                                 
Symbol
cop1
Name
(RefSeq) E3 ubiquitin-protein ligase COP1 isoform X1
  KO
K10143  E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27]
Organism
kmr  Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr04115  p53 signaling pathway
kmr04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:kmr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    108238573 (cop1)
 09140 Cellular Processes
  09143 Cell growth and death
   04115 p53 signaling pathway
    108238573 (cop1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:kmr04121]
    108238573 (cop1)
Enzymes [BR:kmr01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     108238573 (cop1)
Ubiquitin system [BR:kmr04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    108238573 (cop1)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     108238573 (cop1)
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_IFT122_1st Beta-prop_THOC3 Beta-prop_WDR3_1st WD40 WD40_CDC20-Fz WD40_Prp19 Beta-prop_TEP1_2nd WD40_WDHD1_1st Beta-prop_WDR3_2nd WD40_Gbeta Beta-prop_EML_2 WDR55 Beta-prop_EIPR1 Beta-prop_WDR36-Utp21_1st Beta-prop_RIG_2nd zf-C3HC4_2 Beta-prop_WDR36-Utp21_2nd EIF3I Beta-prop_WDR19_1st Beta-prop_TEP1_C zf-C3HC4 Beta-prop_CAF1B_HIR1 Beta-prop_NOL10_N WD40_MABP1-WDR62_2nd zf-RING_2 Beta-prop_EML Beta-prop_DCAF4 zf-RING_UBOX DSE1_N ASA1 Beta-prop_Aladin Beta-prop_WDR90_POC16_2nd zf-C3HC4_4 zf-C3HC4_3 zf-RING_5 RING_XB3-XBAT31 WD40_like WD40_RFWD3 Beta-prop_WDR35_TULP_N Beta-prop_Vps41 PAC11 Beta-prop_IFT140_1st Beta-prop_DCAF12 Beta-prop_WDR41 zf-rbx1 WDR90_beta-prop_4th zf-RING_10 UvrD-helicase zf_C2H2_10 RING-HC_RBR_RNF216 RING_ZNF598 CREPT zf-C2H2_AcuF
Other DBs
NCBI-GeneID: 108238573
NCBI-ProteinID: XP_017276256
UniProt: A0A3Q3H0Q5
LinkDB
Position
LG20:16413116..16423887
AA seq 708 aa
MSSNRPQQSGGGASSVPSTSSSSGGGTGGSGSTAVTSNGNSSGNVVPSSRTLAATGEGGL
SVPTVPAVSSSRGGLASLSRPTSSAGSRKRSLHQAPLYNGLLNSYEDKSNDFVCPICFEM
IEEAHMTKCGHSFCFKCIRQSLEDSNRCPKCNYIVDNVDQLYPNFLVNELILKQKQRSEE
KRLKLDPPNWSRWQVFQDILNPDQENLDLANVNLMLELLVQKKKQLEAESQAAQRQILME
FLKEARRNKREQLDQLQKELNFLEEDIKRVEEMSGLYSPIIEAECTVPNVEAPSPAPSCS
SIIEPPDYNQPPGFGSTTPGKRQTWYNSTLASRRKRLTAHFEDLEQCYFSNKMSRITDEG
RNLNQLDDFMECLSKFTRYNTVRPLATLSYASDLYNGSSIVSSIEFDRDCDYFAIAGVTK
KIKVFEYGTVIQDAVDIHYPVNEMTCNSKISCISWSSYHKNLLASSDYEGTVILWDGFTG
QRSKVYQEHEKRCWSVDFNLMDPKLLASGSDDAKVKLWSTNLDNSVASIEAKANVCCVKF
SPTSRYHLAFGCADHCVHYYDLRNTKQPIMVFKGHRKAVSYAKFVNGEEIVSASTDSQLK
LWNVNKPHCLRSFKGHINEKNFVGLASNGDYVACGSENNSLYLYYKGLSKTLLTFKFDTV
KSVLDKDKKEDDTNEFVSAVCWRALPDGESNVLIAANSQGTIKVLELV
NT seq 2127 nt   +upstreamnt  +downstreamnt
atgtcaagcaaccggccgcagcaaagcggtggcggggcaagttcggtgccgagcaccagc
agcagcagcggcggcggcacaggaggcagtgggagcaccgccgtaactagtaatgggaac
tcgtcgggaaatgttgtgccctcctcccggactctggcagcaaccggcgagggaggcttg
tccgtgcccactgtgcccgcggtgtcgtcgtcccggggcgggttggcttccctgagcaga
ccgacatcgtccgcgggcagcaggaagaggtccctccatcaagcacctttgtacaacggc
ctcctgaattcatacgaagataaaagcaacgactttgtctgtccaatttgcttcgaaatg
atagaggaagcacacatgacaaagtgtggccacagtttttgtttcaagtgtattcgccag
agtttggaggacagcaacagatgtcccaagtgtaactatattgttgataacgtggatcag
ctgtacccaaactttctcgtaaatgaactgatccttaaacagaaacaaaggtcagaggag
aagagactgaaattagatcctcctaattggtctcggtggcaggtcttccaggatattttg
aatcctgaccaggagaacttggaccttgcgaacgtcaatctgatgttggagcttctcgtt
cagaagaagaagcagctggaggcggaatcccaagcggctcagagacagatcctcatggag
tttctgaaagaagccaggagaaacaagagagagcaactagaccaactacagaaagagctc
aacttccttgaagaggacattaaacgtgttgaggaaatgagtgggctctactccccaata
atagaggcagagtgcacggtgcctaacgtcgaggctccctctccagcgcccagctgcagt
agcatcatcgagccaccagattacaaccagcctccagggttcggctcaacaaccccggga
aagcggcagacctggtacaacagcacgctggcgtcgagaagaaagagactgacggctcat
ttcgaggatctggagcagtgctacttctctaacaagatgtcacgcatcacagatgaaggc
aggaacctgaaccagctggatgatttcatggagtgtttgtctaaattcactcgctacaac
actgtgcggccactggccaccctctcctacgccagtgacctttacaacggctccagtatt
gtctctagtatcgagttcgaccgcgattgcgactactttgctatcgctggcgtgaccaag
aagatcaaggtttttgagtacgggactgtcatccaggacgcggtggacatccactaccct
gtcaacgaaatgacctgcaattccaaaatcagctgtatcagctggagcagttatcacaag
aaccttctggccagcagcgattatgaaggcaccgtcatcttgtgggatggcttcaccggg
cagaggtccaaagtctaccaggaacatgaaaaaagatgttggagcgtggactttaatctg
atggaccccaagctcttagcctctggttccgacgatgctaaagttaagttgtggtcaacc
aatcttgacaactcagtggctagcatcgaggctaaagctaacgtctgctgtgttaaattc
agcccgacctccagatatcatctggccttcggctgtgcggaccactgcgtccactactat
gatctccgcaacactaagcagccaatcatggtgttcaaaggccacaggaaggccgtgtcc
tacgccaagtttgtaaacggagaggagatcgtttccgcgtcgacagatagccagctgaag
ttgtggaacgtcaacaaacctcactgcctgcgctccttcaagggccacatcaatgagaag
aactttgttgggctggcgtccaacggggactatgttgcctgcggcagtgagaacaactcc
ttgtatctgtactacaaaggactttccaagacactgttgacattcaagtttgacacagta
aagagtgtcctggacaaagacaagaaggaggatgacaccaacgagttcgtcagtgccgtc
tgctggagggcgctgcccgacggagagtcaaacgttctcatcgctgcaaacagtcaagga
acaatcaaggtacttgagcttgtctga

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