Kryptolebias marmoratus (mangrove rivulus): 108238641
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Entry
108238641 CDS
T05608
Symbol
chd8
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 8 isoform X1
KO
K04494
chromodomain helicase DNA binding protein 8 [EC:5.6.2.-]
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
108238641 (chd8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
kmr03036
]
108238641 (chd8)
Chromosome and associated proteins [BR:
kmr03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
108238641 (chd8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
Helicase_C
Chromo
BRK
ResIII
HDA2-3
HTH_CHD1_Hrp3
MUN
Motif
Other DBs
NCBI-GeneID:
108238641
NCBI-ProteinID:
XP_017276357
LinkDB
All DBs
Position
LG20:18143794..18160632
Genome browser
AA seq
2644 aa
AA seq
DB search
MADPIMDLFEDTPLFNLDALQDDSFSQGSSDPVEEALKLALGQVVPTVDSESTPDLAVDT
SLDVPVATPSIPDLTPVQVLTQQPITVATAQTVSVAPAPTMTPVPAPTALPISALSTVPT
QIDTVPQIQAQTTIPIASNTSGAASNTVLLSSPLTVSSSSVTTATAATQQLTQITHQLTP
QQLAAITQQAGGKIVILKGPQGQAQVLQAVSGTTGQTAGKVIRVLSGTPLKPGVSILQGG
AVLNQTSPGQTQVKVGVAGVQRLLQSANGPVKQVLLTSMPQQVQQTQGQSIHVQIPAQAQ
MAQGQTTLQVQPQAAQIQVQTQAQAAQIQVQPQTAQIQVQTQAQAGQIQVQHQGQAAPTH
VQGQVQLQPAMQAQTQGGEAKRITLVLQQPSQTVSATPAGQAVAAQQQVTQVQQVQAAQG
GQQQQTQAPARLVLGQLPSGKLVLQGSQLAALAQARTAGQAGGQPKVLTIQLQVQQQPNQ
QGGVKYQLVSGAGSAGSPQVLQISQGQGGQRVAVPIKMLLQPQTSSASSSGGAVSVVKVL
NTSAAGPSTTTTTPSQAIRISKAPGEPASVRRVEILCKQEKANRIVAEAIARAKARGEKN
LPRVLNQDELPSTQATLSEMGGTVTVVSAAKKKSSGGGSKKKSPISGGQVPKTVVGADKK
SKVKAPGGTVTLVGGTMIPGNKSKSKAKANTITLVGAKKRKRNASSDHSDGELSPPSPAA
LEDDMIMKRRSNRVVKRKKYTEDLDIKITDDEDEQEDVDVTTTAAAVASISGGAAAQLKQ
EVELMDADGLPSMQFFVENPSEEDAAIVDKVLSMRITRKEVSPGQYTNMEEFFVKYKNYS
YLHCEWATLVQLEKDKRIHQKIKRFKTKHAQMRRLFQEDEEPFNPDYLEVDRILDVSHSV
DKDNGEPVIYYLVKWCSLPYEDATWELKEDVDEGKVKEFGKIQNRQPRLKKTARPPASSW
KKLEETREYKNGNILREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSITLLSEIYAT
GIQSPFLVIAPLSTITNWEREFSTWTHMNAIVYHGSLASRQMIQQYEMYCKDDKGHLIPG
AYKFDALITTFEMVLSDCPELREISWRCVIIDEAHRLKNRNCKLLDSLKMLDLEHKVLLT
GTPLQNTVEELFSLLHFLEPAQFPSETEFLRDFGDLKTEEQVQKLQAILKPMMLRRLKED
VEKNLAPKQETIIEVELTDIQKKYYRAILERNFSFLSLGANSNSNVPNLLNTMMELRKCC
NHPYLINGAEEKIVAELREVYDPLAPDFHLQALIRSAGKLVLLDKLLPRLKAGGHKVLIF
SQMVRCLDILEDYLINKRYLYERIDGRVRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLG
INLTAADTCVIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMLDKASLKL
GLDRAVLQSMSGNKDSNVNGLQQFSKKEIEDLLRKGAYAAIMDENDEGSRFCEEDIDQIL
QRRATTITIESEGKGSTFSKASFVASENRNDIALDDPEFWEKWAKKADIDMDSINRKNTL
VIDTPRIRKQTRQFSSLRGEGGDLSDLDSDDEYPPANSRHSRSSRRSDRHSGGGYGRTDC
FRVEKHLLVYGWGRWRDILSHARCKRRLSERDVETICRVILVFCLLHYRGDENIKSFIWE
LITPPENGREPQTLLNHSGLSIPVPRGRKGKRVKAQSTFDVQKVEWIRKYNPDTLLLDDS
YRKHLKHQCNKVLLRVRMLYYLKQEVIGEHADSVLKGANIRDVDIWMPEMEQQEVPAAWW
DSDSDRSLLAGVFKHGYEMYTTMRADPCLCFLERVGRPDDKAIDAEQHTGDAELGDDAEY
DKYAEDPEFKPAPRHAKDLLDEPDSMNVDDEVSVEDKMAVMVTESITSQSGACDWPSSSS
LTARLRRLITAYQRSYRQEQLKIEAEAKGDRRRRRCEQASKLKEIARQERQQRWTRREEC
DFYRVVSTFGVEKVKKEPGFQEGPDLEFDWTRFRTFARLDKKTDESLSRYFRSFVAMCRR
VCHLRPGRGEDPSELSQTVAPITEERASRTLYRISLLRRLRERVLPHPSLEEHLPLAPRS
SELPAWWRMPEHDRQLMLGASLHGVSRTELSIFSDPQFTFSTAREQFIQSQQALPPPPPP
PPPPPPVMTFSQPKTELDLPRVKEEESDESVRLFRDEIGAELQSTPLSHQGGKVQGQGWS
FKRSKERGDKPEGARKGDGGSDSDSDSDSGSSSSERSGSSDDSGDSDEEGEGGGMKVGDV
DEDNSLLSMTPSQDSIPPPDPIRVDWPKDRVLINRLDNLCTLVLTGQWPTGRRYVSEAQL
HPNSELIGDEMAYTRLIRKPSSTPLGLGTEGENGEFTVKLLKEEGLKLTFSKQALMPNGS
GGESSSRKKRKDLELSDLDGLHDALERTPRRRDPPTWLKENPDYEVEGDMLELLVNRSKR
KRRRRADKVLTGTEKVKLINMRTGKKVGAAFCPMLQELREYLEENPDIAVAPEWSEAVRN
SGLLPESLFHRLLMEHSEIPKKSRRRHHHHHHHHHHYHTPEPTPEDPTLDGVEEETLVSD
GAYMMDEDDLQTPHHFLTSPDFDVKMEGGDSLSQGDYDSSDQEALLDDVIIAQKDSDSSS
SSED
NT seq
7935 nt
NT seq
+upstream
nt +downstream
nt
atggcagatcccattatggacctctttgaggacacgcctctgttcaacctggatgcccta
caggatgattccttctcgcagggctcctcggaccccgtggaggaagcgctgaagctggct
ttgggccaggtagttccaaccgttgattcggagtctaccccggaccttgccgtagacaca
agccttgatgttcctgtagcaactccttccatccctgaccttacccctgttcaagttctc
acacagcagccgataacagtggccactgctcagactgtttctgtagctcctgctcccacc
atgaccccagtcccggctccaactgctcttcctatctctgctctatccactgttcctacc
caaattgatactgtgccgcagatacaggcccagaccaccatccccattgccagcaacacc
agtggagctgccagtaacaccgtattgctgagctcacctttgactgtttcaagctcttcg
gttaccactgccactgctgccacacagcaactcacacagataactcaccagctcactccc
caacaattagccgccatcacgcagcaagctggcggtaaaattgtaattctcaaaggtccc
cagggtcaggcccaggtgctgcaggctgtatcagggactacaggtcagacagctggaaag
gtcattcgtgtgttgtctggcacacctctcaagcctggtgtgtccatactgcagggaggt
gcagtcttgaatcagacgagcccaggacaaacccaagtcaaggtgggtgttgcaggtgtg
cagagacttctgcagtctgccaatgggccagtcaaacaggtgttgctcacatccatgcct
cagcaggtgcagcagacgcaaggtcagtccattcacgtgcagattccagcccaagcgcag
atggctcaaggtcagactactctccaagttcaaccccaggctgcccaaatccaggtccaa
acccaggcacaggctgctcagatccaggttcagccccagacagcccagatccaggtccaa
acccaagcacaggctgggcaaatccaggtccagcaccaaggccaggcagctccgacccat
gtccagggtcaggtgcagctccagccagccatgcaggctcagacacagggtggtgaagca
aagcgcatcaccctggttcttcagcagccttctcagaccgtctctgccacaccggcaggt
caagctgttgcagctcaacaacaagtcacacaggtccaacaggttcaggcggcacaaggg
ggtcagcagcagcaaacacaggcccctgctagactggtgctgggtcagctcccaagtggc
aaactggtcctccagggaagccagctggcagccctggcccaggcccggactgcaggccag
gccggagggcagcccaaagtcctcacaattcagctgcaagtgcaacagcagcccaaccaa
caaggaggagttaagtatcagctggtgtccggagctggaagcgctggcagcccacaggtg
ttgcagatatcccaaggccaaggaggacaaagggtggcagtaccgatcaaaatgcttctg
cagccacagacaagttcggcctcatcttctggcggtgctgtctctgtggtgaaggtcctc
aacacttcagcagcaggcccctctactacaaccaccactccatcccaggccattcgtatc
tccaaagctccaggcgagcctgcgtcggtgcgacgagtggagatcctttgcaagcaggag
aaagcaaatcgtatagtggctgaagccattgcgcgggccaaagcacggggtgagaagaac
ctgcccagagtcctgaaccaggatgagcttccaagcacgcaggccaccttgtcagaaatg
ggaggaactgtgactgtagtgtctgctgctaagaaaaaaagcagcggtggaggaagcaaa
aagaaaagtcccatatctggaggacaggtccctaaaactgtcgtgggagctgacaaaaaa
agcaaagtgaaggcaccaggaggaacagttacattagttggaggcaccatgatacctggg
aacaagagcaaaagcaaggctaaagcaaacaccattactctagtgggagcaaaaaaaaga
aagagaaatgcatcttcagaccactctgatggagagctgagcccaccttcgcctgctgca
ctggaggatgacatgattatgaagaggcgctccaatcgtgtggtgaagaggaagaagtat
acggaagatctggatatcaaaataacagatgatgaagatgagcaggaagatgtagatgtt
actacaacggcagccgccgtggcctccatcagtggaggggcagcagcgcagctaaaacag
gaagtggagctgatggatgctgatggacttcccagcatgcagttctttgtggaaaatcca
agtgaggaagatgctgccattgtagataaagttctgtctatgaggataacaaggaaggag
gtgtctccgggccagtatactaatatggaggaattctttgtaaaatacaaaaactattca
tacctacactgtgagtgggccactttggtgcagctggagaaagataaaaggatccatcaa
aagatcaagaggttcaagaccaagcacgctcagatgaggcgcttgttccaggaggatgaa
gagccttttaacccggactatcttgaagtggataggatcctggatgtgtcccacagtgta
gacaaggacaatggcgaacccgtcatctactacctggtgaaatggtgctccctgccatat
gaagatgctacttgggaactaaaagaggatgttgacgagggcaaagttaaggagttcggc
aaaatccaaaataggcaacctcgcctaaagaaaacggctcgacctcctgccagttcatgg
aagaagttggaggagactcgagagtacaagaatggcaacatacttcgagaatatcagctg
gaaggagtcaactggcttctcttcaactggtacaacaggcagaactgtatcctggcagat
gagatgggtctggggaaaaccatccagtccatcacgctgctctcagagatatatgctacc
ggcatccaaagcccctttcttgttatcgctcccctttctaccatcaccaactgggagagg
gagttctccacttggactcacatgaatgccattgtctaccatggcagccttgccagtcga
cagatgatccagcagtatgagatgtactgcaaagatgacaagggacatttgatcccaggt
gcttacaaatttgatgccctcatcacaacgtttgagatggtgctgtccgactgcccagaa
ctgagggagatctcctggcgttgtgtgatcattgatgaagctcaccgccttaaaaatcgc
aactgcaagctgttggacagcttgaagatgcttgatctggaacacaaggtgctgttgacc
ggcactcctctgcagaacacggtggaggaacttttcagtctgcttcatttcctggagcct
gctcagttcccctctgaaactgaatttcttagagattttggagacctcaaaactgaggag
caggtgcagaaactgcaggcaattttgaaacctatgatgttgcgcaggcttaaagaggat
gtggagaaaaacctggcgcccaaacaggagaccattattgaggttgagttgactgatatc
cagaagaagtactaccgggccattctggagaggaactttagtttcctcagtttgggagcc
aacagtaacagtaacgtccccaatctgctcaacacaatgatggagctccgcaagtgttgc
aaccacccctacctcataaatggtgcagaagagaaaattgtagcagagttgcgagaggtg
tacgaccccctggcccctgactttcatttgcaggctctaattcggtcagctgggaaactg
gtgctacttgacaagttgctgcctcgcctcaaggctggaggccacaaagtgctcatcttc
tcccagatggtgcgctgcttagacattctggaggactacctcatcaacaaaagatacctt
tatgaacgaattgacggcagagtacgggggaacttgcgacaggcggccatcgatcgcttc
tgcaagcctgactcggatcggtttgtcttcctgctgtgtacccgtgctggtggtctgggc
atcaacctgacagctgctgacacttgtgtcatatttgactcggactggaatccccaaaat
gacctgcaggcccaagcgaggtgtcatcgtattggccagtcaaaggcggtaaaagtctac
agactcatcaccaggaattcctatgagagggagatgctggataaagcaagtctgaagctt
ggtctggaccgagctgtgctgcaaagcatgagtggcaacaaagacagtaacgttaatggg
cttcagcagttttctaagaaggagattgaagatctgttgaggaaaggcgcttacgcagcc
atcatggatgagaatgatgaagggagtcgtttctgtgaggaagatattgaccagatcctt
cagcgaagagccaccaccattactattgagagtgaaggaaaggggtccactttctccaaa
gccagcttcgtggcctcagagaaccgtaacgacatcgccctcgacgaccccgaattctgg
gaaaaatgggccaagaaagccgatattgacatggactccatcaatcggaagaacactcta
gtgattgacactcccaggattcgcaagcagacccgtcagttttccagtttacgcggcgaa
ggtggagacctgtctgatctagatagtgatgatgagtatccacccgccaattccagacac
tcgcggtcctctcggcgctccgatcgccacagtggagggggttacggccgtaccgactgt
ttccgggtggagaaacacctgcttgtttatggctggggtcgctggagggatatcttgtcc
cacgccagatgtaagaggcgtctgagcgagcgtgatgtggaaaccatttgccgcgtcatc
cttgtcttttgtctactgcattatcgtggagatgaaaacattaagagtttcatctgggag
ctcatcacgccaccagagaacggccgtgaacctcaaacactactaaaccactctggtctt
tccattcctgttccaagaggcaggaagggtaagagggtaaaggcccagagtacatttgat
gtacagaaggtggagtggatacgcaagtacaaccccgacactctgctgcttgatgacagc
tacaggaagcacctcaaacaccagtgcaacaaagtgctgctgagggttcggatgctctac
tacctgaaacaggaagtcattggtgaacacgcagattctgtcttgaaaggagctaatatc
agagatgttgatatctggatgccagagatggagcagcaggaggtgcctgcagcgtggtgg
gattctgattcagaccgctcactgctcgctggtgtattcaaacatggttatgagatgtac
accaccatgcgggctgatccctgtctctgcttcctggagagagttggtcggcctgatgat
aaggccatcgacgccgagcagcacaccggtgacgctgagctgggagatgatgctgaatat
gataaatatgcagaagatccagaattcaaaccagcaccaagacacgccaaagatctttta
gatgagcctgattctatgaacgtggatgacgaggtttcagtggaagacaagatggcagtc
atggtcacagaaagcattaccagccagagtggagcgtgtgactggccttcgagctcgtct
ctaacagcacggctgcgccggctgatcactgcctaccagcgcagctacaggcaggagcag
ctgaagattgaagccgaggccaagggtgaccgcaggcgcaggcggtgcgaacaggccagc
aaactgaaggaaattgcacggcaggagcgacagcagaggtggacccggagagaagagtgc
gacttctaccgtgtggtgtcaacatttggagtggagaaggtgaaaaaggagccaggtttt
caggagggaccagatcttgagtttgactggactcgtttccgtacttttgctcgtctggat
aagaaaaccgatgagagcctcagtcgatacttccgctcctttgttgccatgtgccgaagg
gtgtgccacctccgcccgggtcgtggtgaagatccatcagagctttcccaaactgtggct
cccatcaccgaggaacgtgcttcacgtactctttaccgtatcagcctgttgcgccgcctt
cgtgagcgagtcctcccccacccctccctggaggagcacctgcctctggccccacgcagc
tctgagctgcccgcttggtggagaatgccagagcacgatcgccagctaatgctcggagcg
tcgctgcacggcgtcagccgcaccgagctctccatcttctcagacccacagtttacgttc
agcacagcccgtgaacagttcatccagagtcagcaggctctccccccgccaccgcctccg
ccaccacccccaccccccgttatgactttcagccagcccaagactgagctggacctaccc
agagtgaaggaggaagagagtgacgagagtgttcggttgttcagagatgaaatcggcgct
gagctgcagagcacacccttgagtcaccaaggaggcaaagtgcaaggtcagggctggagc
tttaagaggagcaaagaaagaggagacaaaccagaaggggcaaggaaaggtgacggaggc
tctgattcagattcagattctgattcgggatcctcatcctcagagcgatcgggcagcagt
gatgatagtggagacagtgatgaggagggggaaggaggaggtatgaaggtgggagatgtg
gatgaagataatagtcttctctccatgactccgtctcaggatagcattcctcctcctgat
cccatcagagttgactggccaaaggaccgtgtgctgattaaccgcctggacaacttgtgt
actcttgtactaactggccagtggcccacggggcggcgttacgtgtccgaagctcagctc
cacccaaactcagagctgattggagatgagatggcttacacaaggttgatacgtaaaccc
agcagcacacctcttggccttgggacagaaggagaaaatggggagtttactgtaaaactc
ctcaaggaggagggcttgaagctgactttctctaagcaggccctgatgcccaatgggtca
gggggggagagcagtagccgcaagaagaggaaggacctagagctgtcagacctagatgga
cttcatgatgcactggaacgtaccccacgacgaagagacccccccacgtggctgaaggag
aacccagattatgaagtggagggagacatgctggagctgctggtgaacaggagcaagagg
aagaggagaaggagggcagataaggtcctcacgggtactgagaaggtcaaacttattaac
atgaggacaggaaagaaggttggagctgctttctgtccgatgctgcaggagctgagggag
tatctggaggagaatcctgatatcgccgtggcacctgagtggtccgaagcagttcggaac
tctggcttgttgcctgaatctctcttccaccgactgctgatggagcactcggagatcccg
aagaaaagccgtcggcgtcatcatcaccaccatcaccatcatcatcactaccacactcca
gagcccacccctgaagaccccaccctggacggagttgaagaggagactctggtgtcagat
ggagcctacatgatggacgaggacgacctgcagacgccccatcacttcctcaccagcccg
gactttgacgttaaaatggaggggggcgacagcctttcccaaggcgactatgacagctca
gatcaagaagcgcttttggacgatgttatcatagcacagaaggactccgactcgtcatcg
agctcagaggactga
DBGET
integrated database retrieval system
