Kryptolebias marmoratus (mangrove rivulus): 108238650
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Entry
108238650 CDS
T05608
Symbol
xrn1
Name
(RefSeq) 5'-3' exoribonuclease 1 isoform X1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr03008
Ribosome biogenesis in eukaryotes
kmr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
108238650 (xrn1)
09123 Folding, sorting and degradation
03018 RNA degradation
108238650 (xrn1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kmr03019
]
108238650 (xrn1)
03009 Ribosome biogenesis [BR:
kmr03009
]
108238650 (xrn1)
03016 Transfer RNA biogenesis [BR:
kmr03016
]
108238650 (xrn1)
03036 Chromosome and associated proteins [BR:
kmr03036
]
108238650 (xrn1)
Messenger RNA biogenesis [BR:
kmr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
108238650 (xrn1)
mRNA degradation factors
5'-3' decay
5' exonucleases
108238650 (xrn1)
Ribosome biogenesis [BR:
kmr03009
]
Eukaryotic type
Pre-60S particles
RNases
108238650 (xrn1)
Transfer RNA biogenesis [BR:
kmr03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
108238650 (xrn1)
Chromosome and associated proteins [BR:
kmr03036
]
Eukaryotic type
Gene silencing
piRNA pathway
108238650 (xrn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
108238650
NCBI-ProteinID:
XP_017276377
LinkDB
All DBs
Position
LG20:16426338..16445686
Genome browser
AA seq
1703 aa
AA seq
DB search
MGVPKFYRWISERYPCLSEVVKEHKIPEFDNLYLDMNGIIHQCSHPNDEDVHFRISEEKI
FADIFHYLEVLFRIIKPRRVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEEKIKKALDKGE
VLPTEARFDSNCITPGTDFMARLQEQLKYFVHNKLSTDKLWQNVKVYLSGHETPGEGEHK
IMEFIRSENAKPGHNPNTRHCLYGLDADLIMLGLTSHEPNFSLLREEVRFGGKKSQKRIT
APEETTFHLLHLSLMREYIDYEFSELKSHMGSDYDLERIIDDWILMGFLVGNDFIPHLPH
LHINHDALPLLYKTYISVLPSLGGYLNENGHLNLRNFEKYMEKLSEFDREHFNEVFVDLK
WFESKIGNKYLNESAGLAAEEEAGSKKSEDSAALSSAEPATAEGKGALGDDEEEEDDMFE
TEFRQYKRTYYMTKMGVDVVSDEFLADQARCYVEGIQWILHYYYHGVQSWSWYYPYHYAP
FLSDIRNISGLELTFDLGRPFMPFQQLLAVLPSASQSLLPECYRSLMTSKNSSIIEYYPV
EFKTDLNGKQQEWEAVVLIPFIDERCLLAAMEPYNHKLTKEEKARNQHSECAVYSYDPDI
DFTYTSSLPQLFPNIIHCHVKKANIPMDAWMVHSDHVSKRADRSALYFCGFPTLHHIRHK
FYKKKNGVVVFQQSSRGENMMLEILPSQEGETICDDVAAQVLGKSVFVNWPHLEEARIIA
VSDGETKFALDEHPGVQRVYDRPSTPPPTKVSFLGDKEQKDWVKDVQGITEHFFKRKGVV
VNETAVLLYGQMLTGRKYIPKANQVVELEKQWAKQILPFAYQTVVTDIKAFYSSLTSYRS
LDELFPPATTVFMVGAPYYGSMGEVQNSQDVIKEGRIRVVFVVPREPQLEHLIQNQHKYS
VKYCPGYILASRLGISGYLVSRFSGSIFIGRGSKRNPCGEQRPNVGLNLKFNKKNEEVPG
YTKRTEKEWLYSDAVEELLAEYLDRFPEVFDTVSRNSHDDMFYEDDIWPGEDQNGAEKVA
EITSWLKSHPVSSISRASCDLQVLDGAIVEKIEEAVERSKVKKNTKTVRVTVKPHLLFRP
LEQQQGVVADPDAEYRLFDRVVNVRESFTVPLGLRGTVIGIKGAEREAEVLYEVLFDEEF
VGGLNIRCASPRAYRLPPCALLNLSHGARVDHTSHKLTAIVKPQPASSGGVNSHRQLAGL
NHSPRSPFIPPQQNNKYAGMKAASQDSRSFPSKGPNQRQQTKAKEEYSNVWQSLQKTGPP
NKPPHWHNNEGNYQQASKDIPVGGIRLLKKNEDANSFLPSQGTSNKGTTDFEDLIASLKI
SKESQQTLPPPAAPQEPTSQTDGPLSPQSFAMKGTMVLKEMLKIDGAGKETPSESTNTAP
SAGQQQNRRRSSKKLAAHMNEPHGGAVQSASPAPAGPANPVPSSKVSDLAHVCAGQGMAP
PDFSFIRNRQGLVVYQVKLSNGLMVHGPQCQSESDAKEEAAFFALQRLNSFGSGFPLPPP
LYAGVAQIRPPPLGAMTPVFNQQGGMLLPPQGYAPPSIWGMPLPPHHPNQPFYGAAGTFP
GAPRQQPAPNLPIGSHNQFIPLQVTKKRVSANKKHQETREFYSAAETVAKNQSQKAQSQN
LGPSQLQSQPHQQEPGGGRGGGPPSSSPGPADGVSTAAAAAAAAAAHTPPRQSAPASGHA
SGSSSKRKHRKLAVNFEAAKVSQ
NT seq
5112 nt
NT seq
+upstream
nt +downstream
nt
atgggggtaccgaagttttaccgatggatttcggagcgctatccttgtctcagtgaagtt
gtgaaggaacataagattccagagtttgacaacctatatctggacatgaacggcatcatc
caccagtgctcccacccgaacgacgaggatgtccactttcgcatttccgaggaaaagatt
ttcgccgacatcttccattacctggaggtgctcttcaggatcatcaagccacgcagggtc
ttcttcatggctgtggatggggtggcgccgagggcaaagatgaaccagcagagaggtcga
agattcaggtctgccaaagaagcagaggagaagataaagaaagctctggataaaggagag
gtgcttcctacagaagctcgcttcgactctaactgtatcactcctggcactgattttatg
gcgagactacaggagcagctaaagtattttgttcacaacaagctctccacggacaagttg
tggcagaatgtcaaggtctacttgtctggtcacgagacaccaggcgaaggagaacacaag
atcatggagtttattcgttctgagaatgccaagcccggtcataatcccaacacccgacat
tgcctgtatggcctggatgctgacctgatcatgttgggtttgaccagccacgagccaaat
ttctccctgctcagagaagaagtcagatttggagggaagaaatcccaaaaaagaataaca
gctccagaggagacaacttttcacctgcttcacttgtctctgatgagagagtacatagac
tatgagttctcagagctaaagagtcacatgggttctgattatgacctggagcgaataata
gacgactggattctaatgggcttccttgtaggaaatgatttcatccctcacctccctcat
cttcacattaatcacgacgctctgccgctgctgtacaagacgtacatcagtgtgctgcca
agcctgggaggttatctgaatgagaacggccacttaaacctccgaaactttgagaaatac
atggagaaactttctgagtttgaccgggaacattttaatgaggtgtttgtagacttgaag
tggttcgagagtaaaataggtaacaaatacctgaacgagtcagctggtctggcagccgag
gaggaagctggcagcaaaaagagtgaggactctgctgccctgagctcagctgaaccagcg
actgcagaaggaaaaggagcgctgggagatgacgaggaagaggaggacgatatgtttgaa
accgagttcaggcagtacaaacgcacctactacatgaccaagatgggcgtggatgtggtg
tctgatgagtttctagccgaccaagcccggtgctacgtggaaggtatccagtggattctt
cactactattatcacggagttcagtcctggagctggtactacccataccactacgccccg
ttcctgtctgacatcaggaatatatcggggttagagctgacctttgaccttgggagaccc
tttatgcctttccagcagctgctggcagtcctgccgtctgccagccagtcgctgctgcct
gaatgctacaggagcttgatgaccagcaaaaactcttccattattgagtactatcctgtc
gagttcaaaaccgacctcaacgggaagcagcaggaatgggaagctgtggtgctcattccg
tttatagacgagaggtgcctgctagcagctatggagccctacaatcacaagctgacaaag
gaagagaaggccaggaatcagcattcggagtgtgccgtctactcatacgaccccgatata
gacttcacgtatacctcctccctgcctcagctgtttcccaacatcatccactgccatgtc
aagaaagcaaacatccccatggatgcttggatggttcattcggaccacgtcagcaagcgt
gccgaccgctcagctctctacttctgtggcttccccactctgcaccatatcagacacaag
ttttacaagaagaaaaacggagtggtcgtcttccagcagagcagcagaggagagaacatg
atgttggaaattcttcccagtcaggaaggagaaacgatatgcgacgatgttgccgcacaa
gtgctgggcaagtctgtgtttgtcaactggccccatctagaggaagctcgcatcattgca
gtttcagatggagaaaccaaattcgctctggacgaacatccaggagtccagcgggtgtac
gacaggccgtccactcctccgcccactaaagtctcctttttgggtgacaaggaacaaaaa
gattgggtgaaggatgtccagggaatcactgaacacttttttaagagaaaaggcgtcgtg
gtgaacgagacggccgtgcttttatacggccagatgctgacgggccgaaaatacatcccg
aaagcaaatcaagtggtggaactggagaaacagtgggccaaacagattctgcctttcgcg
taccagactgtggtgacggacatcaaggccttctactcgtctctgaccagctacaggagc
ctcgatgagctctttcccccggcaaccactgtcttcatggtgggagcgccttactacggt
tctatgggagaggttcaaaattctcaagacgtcatcaaagagggtcggatcagagtggtg
ttcgttgtgcctcgcgagccgcagctggagcacttaatccagaatcagcataaatactct
gtcaagtactgccccggctacatcctggcgtctcgcctcggcatcagcggctacctggtc
tctcgcttctcgggcagcatcttcattggcagaggctccaaaaggaatccctgcggggag
cagagacctaacgttgggctgaacctgaagttcaacaagaagaacgaggaggttcccggg
tacaccaagaggactgaaaaagagtggctgtactcggatgctgttgaggagctgctcgct
gaatacctggacagatttcctgaagtatttgacacagtctccagaaactcccatgacgat
atgttttatgaagatgacatctggcccggggaggatcagaacggggcggagaaggtggct
gaaatcacctcgtggctgaaaagccacccggtcagctccatcagcagggcgtcgtgcgac
ctccaggtgctggacggcgccatcgtggagaagatcgaggaagcggtggaaaggtccaag
gtgaagaagaacaccaagacagtccgtgtgacagtgaagcctcatctcctcttcaggccc
ctggagcagcagcagggcgtggtcgcggacccggacgcagagtaccgtctgttcgaccga
gtcgtcaacgtcagggagagtttcaccgtcccgctgggactcagagggacggtcatcggc
ataaaaggagccgagcgtgaggcagaggttctctacgaagtgctgtttgacgaggaattt
gttggaggtctgaacatcaggtgtgcgtctcctcgtgcctaccgcctcccgccctgcgcc
ctgctcaacctttcccacggagcgcgggttgaccacacgtcccacaaactgaccgccatc
gtcaaaccccagcctgcctccagcggcggcgtcaactcccaccgtcagctggcgggcctg
aaccactccccccgctctccgtttatacccccgcagcagaacaacaagtatgccgggatg
aaggcggcgtctcaggacagcaggagctttccctctaaagggcccaaccagagacaacag
acgaaggccaaagaggagtacagtaacgtgtggcagtctctacagaagacaggccctcct
aacaaacctcctcactggcacaataacgaaggaaattaccaacaggccagtaaagatatc
ccagtcggtggcatcaggctgttaaagaaaaacgaagacgccaactcctttctcccctca
caaggcacttctaataagggtacaactgattttgaagacctcatcgcaagtctgaagatc
tccaaggaaagccagcagacgttaccaccgcctgcagccccacaggagcccaccagccag
acagatggcccgttgtctccacagtcctttgccatgaagggaaccatggtgctgaaggag
atgcttaagattgacggagctggaaaagaaaccccctcagagtcgacaaacacggccccc
tctgctggccagcagcagaacagacggcgatcatccaagaaactcgctgcccacatgaac
gagcctcacggcggagcagttcagtcggcctctccagcaccagctggccccgccaacccc
gtgccgagcagcaaagtgtcggatctggcccatgtctgcgcagggcagggtatggcacct
cccgacttcagcttcatccgcaacagacagggtctggtggtgtatcaggtgaagctgtcc
aacgggttaatggttcatggcccacagtgccagtcagaaagtgatgccaaggaggaagct
gctttctttgcactacaaagactgaactcatttgggtcaggattccccctcccgcctcct
ctctacgcaggcgtggctcagatacgacccccgcctttaggagccatgacgcctgtcttc
aaccaacaaggtggtatgttgttgcccccccagggttacgctcctccatctatttgggga
atgcctctgcctccccaccacccgaaccagccgttctacggagcagcaggaaccttcccc
ggtgccccccgccagcagccggcaccaaacctgccaattggctcccacaaccagttcatc
ccattacaggtgactaaaaagcgagtatcggccaacaaaaagcaccaagagacccgggag
ttttacagcgccgcggaaactgtcgccaagaaccagtcccagaaagcccagagccagaac
ttgggtccgtcgcaacttcagagccagccgcaccagcaggagcccggcggtggcaggggc
ggcggccctccgtcgtccagtcccggcccagcagacggcgtttccacggcggcggcggcg
gcggcggcggcggcggctcacaccccacctcggcaaagcgcgccggcgtcaggccacgcc
tctggctcctcctctaagaggaagcaccggaagttggccgttaactttgaggcagctaaa
gtgtcacagtga
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integrated database retrieval system
