Kryptolebias marmoratus (mangrove rivulus): 108238676
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Entry
108238676 CDS
T05608
Symbol
col15a1b
Name
(RefSeq) collagen, type XV, alpha 1b isoform X1
KO
K08135
collagen type XV alpha
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
kmr00535
]
108238676 (col15a1b)
Proteoglycans [BR:
kmr00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
108238676 (col15a1b)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Laminin_G_3
DUF1554
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
108238676
NCBI-ProteinID:
XP_017276415
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All DBs
Position
LG20:complement(16448321..16494069)
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AA seq
1360 aa
AA seq
DB search
MRTMGVNRLGLALFFLISSPVRAQWWSLIWASPKTTTVPPPVTSLTVTSPEASAFQGTAS
KSVGKEDKVTVNYTEGTQIKESVLTLSAHGSGVLVSALSTVEPGTTPPGEHSGGGNQSRS
KFKPLKHWKSERGSGSHLDLTELIGVPLPPSVSFTPGYEGFPAYIFGKDANIGRLTKTFV
PGPFYRDFAIIVTVRPASQRGGVLFAVTDAQQKVVELGLALTPVRGGIQSILLYYTDKEQ
ASHSHKAAAFSVPDMTDQWSRFTVVVEDNEVRLYMDCGEAERTTFHRRPEKLTFSHNSGI
FVANAGSTGLEHFVGSIQQLIIKDDPRAAEEQCEEDDPYASGYASGDDALDDRETEEVSV
KRGKERKPVGKDVVPVRAPPTKAPEVDEYSGHMTSTAVNEVQLITDSKQTEEPGEPSGRG
RVRPGLKGEPGDPGPPGPSGPPGPRYILKEKLGPPGPQGPTGTPGSPGKPGRDGQKGSRG
DKGEPGHRGPQGFPGLNGEIGAKGEKGDPGVGSPGPPGLPGPPGPPRSRSVPYGPDALGS
GFEDLDSDTELIRGLPGPPGPPGPPGPPGHQQSSGHAGPPGTPGKEGAPGKQGIPGAAGT
EGPPGTVGQKGDQGLPGPPGPKGERGSVGVPGSPGPQGPNGPRGKRGPAGLPGPPGPPGP
PGTKFFVEDMEGSGKSDTLVKAGVRGPQGPPGLRGPPGEDGAPGPPGLTVKGEPGVPGPD
GYPGPAGLPGARGPKGEKGSPGPKGDRGADGRNITGPPGPPGPPGLAVNLQDLLVNLTEG
IFNFTEIRGPPGPMGPEGLPGKAGFPGPRGPKGDTGPPGPLGPAGLKGQKGEPGVTIAAD
GSVLSAPRGPQGPKGPKGDRGFPGPAGLMGPTGPPGQKGEYGFPGRPGRPGITGRKGDRG
ESISLPGPPGPPGQPGPPGRILGLSGTVFPVLPRPHCKKGREALIRRHSEGLKGDKGDEG
MPGEPGTSVPRFPDGIMGAKGDQGVKGEKGERGDSGLPGPQGLPGRSGLVGPKGESIVGP
PGPVGPPGQDGAPGFGRPGPRGPPGPAGPPGPAPAYGSAVSIPGPPGPPGPPGSPGHASP
VTTYKMIQALTRETDHAAEGTLAYVSERGGELYIRARNGWRKIPLGELIQYGSTSSEASQ
ALRKPEDWSGSQRVHSQELKDSSRGYQPSYNILPHTISSVPGLHLIALNAPLKGDMRGIR
GADFQCYQQARSVGLTSTYRAFLSSHLQDLATIVRKADRVDLPVVNLRGDVLFSSWASIF
SGNGGMFNPSTPIYSFDGHNVMTDSAWPEKLIWHGSSTVGIRLTSNYCEAWRTADMAVTG
QASLLQTGRLLGQHARSCSNHYMVLCIENTYVGSTHQRRT
NT seq
4083 nt
NT seq
+upstream
nt +downstream
nt
atgaggacgatgggagtcaatcgccttggtcttgcgctctttttcctcatctcctctcct
gtgcgtgcccagtggtggagtttgatctgggcaagccctaagaccaccaccgttcctcct
cctgtcacctctttgaccgtcacctctccagaggcctctgccttccaggggacagcatca
aagtctgtgggaaaagaggacaaagtgacagtgaactacacggagggcactcagataaag
gagtctgttctgacccttagtgcacacggctcaggggtgttagtctctgccctgagcacg
gtggaacctggaacgacacctccaggggaacactcaggtggaggcaaccagagcaggtca
aagttcaaaccactgaaacactggaagagtgagagaggctctggaagtcatctggacctg
acggagttaataggggttcctctccctccttctgtctccttcactcctggctatgagggt
tttccagcctacatctttggaaaagacgccaacatcggccgactcacgaaaacctttgtg
cctgggccattttaccgggactttgccatcattgtcacggtgcgcccagccagccaaaga
ggaggcgtgctctttgctgtcacggatgcccaacagaaggtggtggagctgggtttggct
ctcactccagttcgtgggggcatccagagcatcttgctgtactacactgacaaagagcag
gcctcccacagccacaaggctgctgcttttagcgtcccggacatgactgaccagtggtca
cggttcacggtggtggtggaggacaatgaggtgcgtctctacatggactgtggagaggcc
gagaggaccactttccatcggaggccagagaaactcaccttctcacacaactctggcatc
tttgtagcaaacgcaggaagcacggggctcgaacattttgtgggctcgattcagcagctg
atcataaaggatgatcccagagcagccgaggagcaatgtgaagaagacgacccctatgcc
tcgggatacgcgagtggagatgatgctctggacgatagagagacagaagaagtctcagtg
aagagggggaaggagagaaaacccgtgggcaaggacgtcgttcctgttagagccccgccc
actaaggctccggaggttgatgagtattcaggtcacatgacttcgacagcagtcaatgaa
gtacaactgataacagactccaagcagacggaggaaccaggagagccatcaggacgtggt
cgtgtcaggcccgggttaaaaggggagcctggtgatcccggaccgcctggtccgtctggt
cctccggggcctcgctatatactcaaagagaagcttggaccaccagggccacaaggacca
acaggaacgcctggatcccccggaaaaccgggaagagatggacagaagggaagcaggggt
gacaaaggtgaaccaggtcacagaggacctcaggggtttccaggtctgaatggagaaatt
ggagccaaaggagaaaagggagacccaggagttggttcaccaggcccccccggccttcca
ggaccccccggaccccctcgatcccgcagtgtaccttatggaccggacgccctgggctct
gggtttgaggatctggacagcgacactgaactcatcaggggtcttcctggtccaccaggg
cctccagggcctcccgggcctcctggacaccaacagtcttcaggccacgctggaccacct
ggtacacctggtaaagagggagctccaggcaaacaggggataccaggtgctgcaggaaca
gaaggtccgcccggaactgttggacagaagggtgatcaagggctaccggggccacctgga
ccaaagggtgaacgcgggtctgtgggtgtcccaggatctcctggcccacaagggcccaat
ggtccacgtggaaagaggggcccagcaggtctaccgggacctcctggcccacccggacct
cctggaaccaaattctttgtcgaggatatggagggatctggaaagagcgacacgctggtt
aaagctggtgtcagaggccctcagggtccccctggcctgcgtggaccaccgggtgaggat
ggagctccaggacctccagggctcactgtcaagggtgaaccaggagtaccagggcccgac
ggttatccaggccctgctggactaccaggagctcgggggcccaagggggagaaaggcagt
ccaggaccaaagggtgaccgaggtgctgatggacgcaatattacagggccacctgggcct
cccggacctcctgggcttgctgtaaatttacaggatctgctcgtgaatttgaccgaaggc
atcttcaacttcaccgagatcagaggacccccagggccgatgggccctgaaggtttacct
ggcaaagctggatttcccggccccaggggaccaaagggagacacaggccctccaggtccc
cttgggccagcagggctcaagggacaaaaaggggaaccaggggtgaccatcgctgctgat
ggatctgttctatctgcaccaagaggccctcaggggccaaaaggcccaaagggagaccgg
ggcttcccaggacctgctggacttatgggaccaacaggacctcctggtcaaaaaggagag
tacggcttccctgggcgcccagggcgacctggcataacggggagaaaaggtgacagagga
gagtcaatcagcctgccgggtcctccagggcctcctggtcaacctggacctccaggaaga
attcttggactcagtggaacggtgttcccggtgctcccccgaccgcactgcaaaaaggga
cgagaggcgctgatacgaagacattcagagggactgaaaggagacaaaggagatgaaggg
atgcctggggagccaggaacatccgtccccaggtttcctgatggaattatgggagcgaaa
ggtgatcaaggagtgaaaggcgagaaaggagaaaggggagactcgggtctgcctggtccc
caaggacttccgggaaggtcgggacttgtgggtccaaaaggtgagtccatcgtgggtcct
ccgggtccagtaggtccacctggtcaagatggagctcccgggtttggacgacctggacct
cgaggcccccccggccctgctgggcccccgggtccagcgcctgcatatggttcagctgtc
agtatcccaggtcctcctggtcctcccggcccaccaggatctccaggtcatgccagcccg
gtgacgacctacaagatgatccaggctctgacccgggagaccgaccacgcagctgaggga
acgctggcgtacgtgtctgagagaggaggagagctgtacatcagagcacgcaacggctgg
cgcaagatcccgcttggtgagttgatccaatatggatccacctcatcagaagcatcccag
gccctcagaaaacctgaagactggagtggatcacaaagggtacacagccaggagctgaag
gatagcagtagaggatatcagcccagctacaatattttgcctcacaccatcagctctgta
cctggtctccatctgatagctctgaacgcccctctcaaaggggacatgcggggcatccgt
ggggccgacttccagtgctaccagcaggcgcgctcagtggggctcacctccacctacagg
gccttcctgtcctcacacctccaggatttggccaccatcgtgaggaaggcggaccgcgtc
gacttacccgtggttaatctgaggggtgacgtattgtttagtagctgggcgtccattttc
tccgggaatggaggcatgtttaatccgtccacgcccatctactcctttgatggacacaac
gtgatgactgactcagcatggccggagaagctgatctggcacggctccagcaccgtgggc
atccgcctgacctccaactactgcgaggcgtggcggacggctgacatggcggtgacgggt
caggcctccctgctgcagacgggccggctgctgggtcaacacgcccgctcctgctccaac
cactacatggtgctgtgtatagagaacacatatgtgggcagcacacatcaaaggaggacc
tga
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