Kryptolebias marmoratus (mangrove rivulus): 108238745
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Entry
108238745 CDS
T05608
Name
(RefSeq) probable histone deacetylase 1-B
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr03082
ATP-dependent chromatin remodeling
kmr03083
Polycomb repressive complex
kmr04110
Cell cycle
kmr04330
Notch signaling pathway
kmr04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
108238745
03083 Polycomb repressive complex
108238745
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
108238745
04350 TGF-beta signaling pathway
108238745
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
108238745
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
kmr03036
]
108238745
Enzymes [BR:
kmr01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
108238745
Chromosome and associated proteins [BR:
kmr03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
108238745
HDAC complexes
Sin3A-HDAC complex
108238745
BRAF-HDAC complex
108238745
REST complex
108238745
SHIP complex
108238745
MiDAC complex
108238745
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
108238745
Heterochromatin formation proteins
Other heterochromatin formation proteins
108238745
Chromatin remodeling factors
NuRD complex
108238745
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Glypican
Motif
Other DBs
NCBI-GeneID:
108238745
NCBI-ProteinID:
XP_017276520
UniProt:
A0A3Q2ZGG1
LinkDB
All DBs
Position
LG5:17973142..17980059
Genome browser
AA seq
482 aa
AA seq
DB search
MALSQGTKKKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPQKAS
AEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAG
AVKLNKQQTDIAINWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHG
DGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAI
FKPIMAKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTIKGHAKCVEYIKSFNLPLLMLGG
GGYTIRNVARCWTFETAVALDCSIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEYLE
KIKQRLFENLRMLPHAPGVQMQAIPEDAPHPDSGDEDEEDPDKRISIRAHDKRIACEEEF
SDSEDEAEGQGGGRRNASNHKKAKRLKKEEEKEGEEKKEVKEEDKEEEKMDTSGPKEEMK
TT
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atggcgctgtctcaaggaacaaagaaaaaagtttgctactactatgacggtgatgtggga
aactactattacggtcaaggccatcccatgaaaccccacagaatccgcatgacacacaac
ctcctcctgaactatggactctacaggaaaatggaaatctacagaccacagaaagccagt
gctgaggagatgacaaagtaccacagtgacgactacatcaagttcctgaggtccatccgc
ccagacaacatgtctgagtacagcaagcagatgcagagatttaacgtcggcgaggactgt
ccagtgttcgatggactgtttgagttttgtcagctctcaacaggtggctctgtagctgga
gccgtgaagctgaacaagcagcagacagacatcgcgatcaactgggctggtggactccac
cacgccaagaagtccgaagcctctggtttctgctacgtcaacgacatcgtcctcgccatc
ctggagctcctcaaataccaccagagggtgttgtacatagacatcgacatccaccatggt
gatggagtagaggaggccttttacaccacagacagggtcatgactgtctctttccacaaa
tatggggagtactttcctggcactggagacctgagggacattggagcaggaaagggcaag
tactatgctgtgaactaccctcttagagacggcattgatgatgagtcttatgaagccatt
ttcaagcccatcatggcgaaagtgatggagatgtaccagccgagtgctgtggttctgcaa
tgtggagcggattctctttctggagacaggctgggctgcttcaacctcaccatcaaaggc
cacgccaagtgcgtggagtacattaaaagcttcaacttgcctctgctgatgctgggcgga
ggaggatacaccatccgcaacgtggcccgttgctggaccttcgagactgccgtggccttg
gactgctccatccccaacgagctgccctacaacgattactttgagtacttcggccccgat
ttcaagctgcacatcagcccctccaacatgaccaaccagaacaccaacgagtacctggag
aagatcaaacagcggctctttgaaaacctccgcatgctgcctcacgctcccggcgtccag
atgcaggccatcccagaggacgctcctcacccggacagtggggacgaagatgaggaagac
cctgacaagcgcatctctatccgtgcccacgacaagaggatagcctgcgaggaggagttt
tcagactctgaggatgaggccgaggggcaggggggaggccgcaggaatgcctcaaaccac
aaaaaggccaaacgattaaagaaggaggaagagaaagaaggagaagaaaagaaagaagtg
aaagaagaagacaaagaggaagagaagatggatacgtcaggaccaaaagaagagatgaag
accacttga
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