Kryptolebias marmoratus (mangrove rivulus): 108239011
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Entry
108239011 CDS
T05608
Symbol
rad50
Name
(RefSeq) DNA repair protein RAD50 isoform X1
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr03440
Homologous recombination
kmr03450
Non-homologous end-joining
kmr04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
108239011 (rad50)
03450 Non-homologous end-joining
108239011 (rad50)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
108239011 (rad50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
kmr03032
]
108239011 (rad50)
03400 DNA repair and recombination proteins [BR:
kmr03400
]
108239011 (rad50)
DNA replication proteins [BR:
kmr03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
108239011 (rad50)
DNA repair and recombination proteins [BR:
kmr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
108239011 (rad50)
BRCA1-C complex
108239011 (rad50)
NHEJ (non-homologous end-joining)
MRX complex
108239011 (rad50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_21
AAA_15
SMC_N
SbcC_Walker_B
ABC_tran
zf-met
AAA_29
AAA_16
AAA_22
AAA_13
Synaptonemal_3
Motif
Other DBs
NCBI-GeneID:
108239011
NCBI-ProteinID:
XP_017276940
UniProt:
A0A3Q3AN83
LinkDB
All DBs
Position
LG13:complement(8178737..8196352)
Genome browser
AA seq
1312 aa
AA seq
DB search
MSKIDKMSILGVRSFGIEDKDKQIISFHPPLTVLVGPNGAGKTTIIECLKYATSGELPPG
SKGGAFVHDPKDAHETDVRAQIKLLFTDVNGEKVTIQRSMSCTQKAKNYTFKSLEQVITR
MKNGERASVSTKCAELDQEMISALGVSKPVLNHVIFCHQEESNWPLSEGKALKEKFDSIF
AATKYIKALETMRQLRLKKSQTVKECQVELRYLKQNKEKAQQIRETVSTKEAQLMASKDS
IQQVENQIDPLENRLIDIDTKFGKVMKLDNDIKALDSRKKQMEEDNKELEETMEQVFQGS
DEELQEVYQNHQRTVKEKERRLTDCQRDLERAVRECQRLNRVKADLLVEQGRLQLEADHH
IQSIKGRDAQVRALSSYLEMEGYDRPPFASLQLESFHQHVSQRLEQEKETLSQIIADLQA
KEQQKQQSIDEMRDKKTGLERTVELKRDLQGKKQQELRNVRADLLRLEGSSTRLQELENE
LAKAERELQQAVQSSNVEELKTEIEQLHKEKAELDRAQRQLDQEIQLLNTHTTARTQMDM
LKKDKMEKDEQVRKIKSRHGDELVSLLGHFPNKRELEDWIYSKSKEINSTRDRLAKLNKE
LASSEQNKSHITAELRKKEQQLASDEEKFFSVCGSQDLDQDLGKLQEDLEKISKQRAMLA
GATAVYTQFISQLTEEREPCCPVCQRTFPSESDLQEVINDMQSKLRLVPDKLKNTEQDLK
KKEKKRDEMISLKPVRQSIVEFQEKELPELRNRLQAVNREIERLKAVVEEQEALLRTLMS
EEETAKACLQDISLMDRYLMDLKELERKIAQHSAKLQGVDLTRTIQQVSQEKQETQHKLD
TTSSKMELKRKLIQDQQDQIQMLKSAVNETRADKLQLSSNMQKQQQLEEQCVEFTTEIQA
LTRDIREAKEQLSPLSATLEKLQQEKQELVERRRQKHEGGQEKINAIRERVKNITAFERD
IRKYVDEGKNTYKEQKESELQETNTQLHEAEKQKEKITKEMGNIRQDIDTQKVQERWLQD
NLTLRKRVEELKEVVTKREALLKEMGNMQVLQLRQERRDAERKLEDLKKSRSIAVGRQKG
FEEELLHYRQELREDQYDKADERYKNKMIIMRTTELVIKDLDIYYKALDQTIMKFHSMKM
DEINKIVRDLWRSTYRGQDIEYVEIRSDVDENSSAGVKRRIYNYRVVMVKGDTALDMRGR
CSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSRSRQR
NFQLLVITHDEDFVELLGRSSYIEHFYRIRKNQDQNSEIIKCNISSLSSYLH
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagatagacaaaatgagcatcctaggggtgaggagctttggaattgaggacaaa
gacaaacaaatcatctctttccatcctcctctaactgtgctggttggacccaatggagca
ggaaaaacgacaattattgagtgccttaagtatgctacatcaggcgaacttccccctggt
tccaaaggaggtgcttttgttcatgatccaaaggacgcccatgagacagatgtgcgagct
cagattaaactcttatttactgatgtcaatggagaaaaagtcaccattcaacgctccatg
tcatgcactcagaaggcaaaaaattacaccttcaaaagcttagagcaggtcataaccaga
atgaaaaatggtgagagagccagcgtttctacaaagtgtgccgagttggaccaggagatg
atttctgcattgggagtatccaagcctgtgctgaatcatgtcatcttctgtcaccaagaa
gagtctaactggccactcagtgagggcaaagctctgaaagaaaaatttgactccatcttc
gctgcaaccaaatatatcaaagctctggagacgatgcgtcagctgcgcctcaaaaaatct
cagacagtcaaggaatgccaggtggagctgcgttacctgaagcagaacaaagagaaggct
cagcagattagagagactgtgtccaccaaggaggctcaactgatggcctcaaaagacagc
atccagcaggtcgagaaccagattgatccacttgagaatcgacttattgatattgacacg
aaatttggaaaagtaatgaagctggacaatgacataaaagctttagacagcagaaagaaa
caaatggaggaggacaataaggagctggaggaaacaatggaacaggtgttccagggatca
gatgaagaactgcaagaagtttaccagaaccaccagaggactgtgaaggagaaagagcgg
aggctgaccgactgtcagagagatctggaaagagctgtccgagagtgtcagagactcaac
agagtcaaggctgatctcttggtagaacaaggtcgtttacagctggaggctgatcaccac
attcagagcatcaaaggtcgtgatgctcaggttcgtgcgttatcatcctacctggaaatg
gagggttacgaccggccgccgttcgcttctctgcagctggagagctttcatcaacacgtc
tctcaaagactggagcaagaaaaagagacactcagtcagattatagcagatctacaagca
aaggagcagcagaagcagcagtctattgatgaaatgagggataagaagaccggactggag
agaacagtcgagctgaagagagacctgcagggaaaaaaacagcaagaactgaggaacgtc
agagcagatctgctgaggctcgagggctcttctactcggctccaagagctcgaaaatgaa
ttggctaaagcggagcgggagctgcagcaagcagttcagagctccaatgtggaagagctg
aagactgagattgagcaactccataaagagaaggctgagcttgaccgtgcacagagacag
ctcgaccaagagattcagctcctcaacacccacacaactgcacgcacacagatggacatg
ttgaaaaaggataaaatggaaaaagacgagcaggtgcggaagattaagtctcgccatggc
gatgagctcgtgtcccttttgggtcactttcccaacaagagagagctggaggattggatc
tattccaagtcaaaggaaatcaatagcaccagggaccggcttgcaaaactcaataaggaa
ctggcttcaagtgagcaaaataaaagccatattactgctgagctgcgtaagaaggagcag
caattagcgagtgacgaagaaaagttcttcagcgtttgtggcagtcaggatctggatcag
gacctgggcaaactgcaggaagatctggagaagatatccaaacaacgagccatgttggcg
ggagccacagcagtttacacccagttcattagccaactgacagaggagagggaaccctgc
tgccccgtgtgccagcggacctttccctcggagtcggacctgcaggaagttattaatgac
atgcagtcaaagctgcgcctggtgccagacaaactgaagaacaccgaacaggacctgaag
aaaaaggagaagaagagagacgagatgatatctctcaaacctgtgaggcagtccattgta
gagtttcaggaaaaggagctgcctgagctgaggaaccgtctccaggccgttaacagagag
atcgagaggctcaaagctgttgtggaagaacaggaggctctgctcaggactttgatgtct
gaggaggagacagccaaggcctgcctgcaggacatctctcttatggacagatacctgatg
gacctaaaagagttggagaggaaaatagctcagcattcagctaagctccagggagtcgat
ttgaccagaaccattcaacaagtcagtcaggagaaacaagaaacgcagcacaagctggac
acaacctccagcaaaatggagctaaaacgtaagcttatccaggaccagcaggatcagatc
cagatgctgaaaagtgccgtaaatgagacgagggcagacaagctgcagctcagcagcaac
atgcagaaacaacagcagctggaggagcagtgtgtcgagttcaccacagagatacaggct
ctgaccagggacatcagggaggcaaaggaacaactgtcgcctctgtctgcaactctggag
aagctccagcaagagaaacaagagctggtggagcgcaggagacaaaaacatgaaggagga
caggagaagatcaatgccatcagagagagagtgaagaatatcactgcattcgaacgagac
atcagaaaatacgtagatgaagggaaaaacacatataaagagcaaaaagaatctgagctt
caggaaaccaacactcagcttcatgaagctgagaaacagaaggagaagatcaccaaagag
atgggaaacatccggcaggacatcgacactcaaaaggtccaagagcgctggttgcaggac
aatctgaccctgaggaaacgtgttgaggagctgaaggaggttgtaactaaacgtgaagct
cttctgaaagaaatgggcaacatgcaagtcctgcagctacgccaagaacgtcgtgatgca
gaacgcaagctagaggatctgaaaaagagccggagcattgcagtgggtcgccagaaggga
ttcgaagaggagcttctgcattacagacaagagttgcgagaggaccagtacgacaaagct
gatgagcgctacaaaaacaagatgatcataatgaggacgacggagttggtcattaaagac
ttggatatctactacaaagctcttgatcaaaccatcatgaagttccacagcatgaagatg
gatgagattaataagatcgtcagagacctgtggcgcagcacctacaggggtcaagatatc
gaatatgtggagatcaggtccgacgtggacgagaactcatccgctggagtgaaacggagg
atttacaactacagagtcgttatggtgaagggagacacagctttggacatgagaggacgc
tgcagtgctggtcaaaaggtgttggcgtccctgatcatccgtctcgctctggcagagact
ttctgtctgaactgtgggatcctggccctggatgaacctactaccaacctggacagagag
aacattgagtcgttggcacatgctcttgtggaaatcattaaaagtcgctctcgtcagcgt
aacttccagctgcttgtcatcacccacgacgaggatttcgtggagctgctgggccggtcc
agctacatcgaacacttctaccgcatccgtaagaaccaggaccagaactctgaaatcata
aagtgcaacatctcctccctgtcgtcgtatctccactga
DBGET
integrated database retrieval system
