Kryptolebias marmoratus (mangrove rivulus): 108239159
Help
Entry
108239159 CDS
T05608
Symbol
col13a1
Name
(RefSeq) collagen alpha-1(XIII) chain isoform X1
KO
K16617
collagen type XIII alpha
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
kmr00536
]
108239159 (col13a1)
Glycosaminoglycan binding proteins [BR:
kmr00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
108239159 (col13a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
108239159
NCBI-ProteinID:
XP_017277189
LinkDB
All DBs
Position
LG22:complement(10728163..10849826)
Genome browser
AA seq
736 aa
AA seq
DB search
MEEEQKWKLGEERRRTTRADPSKQPLWARWTRLSGLTICFAMCVACLGVCVFVIVRTSEM
RSRIVSLEQQQLSAWMLAQEQVEPLILGRLDQILEEKLAARLPKSREVREVPHSCLCPPG
PPGPPGRAGFPGDKGSMGIPGRMGLKGQAGEKGAPGEPGLSIIGPRGPPGQPGTRGFPGF
PGPIGLDGKPGLNGLKGDTGPRGPKGNPGEPGPKGEKGVCGDSTHRGLFVQDLPLKTLAA
LRSSQALMLKQGEPGVQGPPGPPGPPGIPGLDGASGPPGKPGEPGKPGKDPRLLPGLKGE
PGVPGQKGDRGDIGPAGPEGSKGGKGEEGIKGDEGKRGFPGERGEKGESGFPGSPGLKGQ
AGIPGTPGIPGIPGKRGFRGEKGEPGMTAKGIKGEPGSPGLPGLKGLKGDKGDKGDVGLE
GPTGPRGPSGPTGEPGRADILNNDNDIRNIRLMGPPGLPGPPGAPGVTGAKGEVGLPGPP
GLDGEKGPRGKPGDPGPPGPVGPEGTRGESGVMGYPGPKGEKGDNGPSGSPGLDGPTGEK
GAKGSPGQIGLPGTMGPKGEPGDGGRSEMMYGPPGPPGPSGPVGPAGPQGPSGPKGEPGF
ATKGEKGDIGQKGEKGDRGHLGLPGAHGLDGRPGPVGLIGPAGVTGPAGPKGERGEKGDS
GLPGPIGPQGIPGLVGPQGLKGNRGERGKKGNRGAKGDKGDQGAPGLDAPCPLGDDGLPV
PGCWNKGQHPFQLAKK
NT seq
2211 nt
NT seq
+upstream
nt +downstream
nt
atggaagaggaacagaagtggaaacttggtgaggagaggaggaggacgacgcgcgcggat
ccttccaagcagcctctgtgggcacgctggacacgtttgtccggtttgacgatttgcttt
gcgatgtgcgtcgcgtgcctgggagtttgcgtgtttgtgattgtgcggacctcggagatg
cggtcccggattgtgagtctggagcagcagcagctctccgcctggatgttggctcaggag
caggtggagcctttgattctgggtcgactggaccagatcctggaggagaagcttgcagca
cggctgccgaagtcccgggaggtgagagaagttccccacagctgcctgtgtccccccgga
cctccaggtcctcctggacgagctggctttccgggtgacaaaggcagtatgggaattcct
ggaagaatgggcttaaaaggacaagcaggtgagaagggtgccccaggcgagcctggtctg
tctatcattggcccaagaggacctcctggacaacctggcacaagaggatttccaggcttt
ccaggtcctattgggttggatggcaaaccagggctaaatggactaaaaggagacaccggt
cctcgtggtcctaaaggaaacccaggggaaccaggacccaaaggggagaagggtgtatgt
ggagactcaacacaccggggcctctttgtccaggatcttcctctgaaaaccctggctgcc
ttgcgttccagtcaggctctgatgttaaagcagggtgaacctggagtgcagggaccccca
ggacctcctggaccccctggtatcccaggtcttgatggagctagtggcccaccgggtaaa
ccaggggagcctggcaaaccaggcaaagacccaaggctcttaccaggactaaagggggaa
cctggtgttccaggacaaaagggtgaccgaggtgatatcggcccagcaggccctgaaggc
tcaaagggaggaaaaggagaagaaggaattaagggggatgaaggaaagaggggtttccca
ggagagaggggagagaagggtgaatcgggtttcccgggttcccctgggttaaagggccag
gctggaatccctggtacacctggtattcctggcattcctggcaagaggggctttcgggga
gagaagggagaaccaggaatgactgctaaaggaatcaaaggagaaccaggttcaccagga
ctgccaggcctgaagggcctcaagggtgataaaggagataagggagatgtaggtcttgaa
gggccaactggaccaagaggtccttcaggcccaactggagagccaggacgagctgacatc
ctgaacaatgataatgatatccgcaacatacggctgatgggtccccctggattacctgga
cctccaggagcccctggagtcactggtgccaagggtgaagttggtctaccaggtcctcca
ggactggatggagagaagggacccagaggaaagcctggggaccctggtcctccaggtcca
gtcggtccagaaggtaccagaggagaaagtggtgtcatgggctatccaggacccaaggga
gaaaaaggagacaatggtccatctggatcacctggtttagatggccctacgggtgaaaag
ggggctaaagggtcccctggccaaattggattacctggcacaatgggtcctaaaggtgaa
cctggagatggaggaaggtcagaaatgatgtatggtcctcctggacccccaggaccttct
ggaccagttggccctgcagggcctcaaggaccatcaggtcctaagggtgagccaggcttc
gctaccaaaggagaaaagggagacataggtcagaaaggtgaaaagggagacagaggccat
cttggactacctggggctcatgggttagacggcagacccggtccagtgggtctaatagga
ccagcaggtgtgacagggcccgccggaccaaagggagagagaggtgagaagggagattcg
ggattaccaggaccaattgggccacaaggcatccctggtttagtaggaccacaaggactt
aaaggaaatcggggagagaggggcaagaaaggcaacaggggggccaaaggggataaagga
gaccaaggagcacctggattagatgccccctgtccgttgggagatgatggtttacctgta
ccaggatgttggaataaaggtcaacatcctttccagctggctaagaagtag
DBGET
integrated database retrieval system
