Kryptolebias marmoratus (mangrove rivulus): 108239220
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Entry
108239220 CDS
T05608
Name
(RefSeq) trinucleotide repeat-containing gene 6C protein-like
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kmr03019
]
108239220
03036 Chromosome and associated proteins [BR:
kmr03036
]
108239220
Messenger RNA biogenesis [BR:
kmr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108239220
Chromosome and associated proteins [BR:
kmr03036
]
Eukaryotic type
Gene silencing
piRNA pathway
108239220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
M_domain
Ago_hook
UBA_7
UBA
RRM_1
RRM_occluded
UBA_NBR1_C
THOC7
Motif
Other DBs
NCBI-GeneID:
108239220
NCBI-ProteinID:
XP_017277292
LinkDB
All DBs
Position
LG12:12266878..12305841
Genome browser
AA seq
1852 aa
AA seq
DB search
QEEKKKKEAAQKKVTEQTTKVPDSVKLDPAPPLSPTSPGATPPAAPSSGNGKRAPSGCQP
QTLLQQRYPPREVPPRFRQQEQKQLLKRGQPLPSGTPPPPTTGHPDTSESAAATVAITSS
PFCSSSSSASLPTELPPQSGQGAQYDNPPWGHLPANRSATSAASSTNLSGWDKLIIDQKD
TEAWPSITLSQSQAPPRGCPLDTDPGHLTSSSSSSTSSSCSTVSMATGANGQTGHFPANH
LSSKANSGPSPANHTGTSMLSSQVTTNRGWGSGPGPSHCPTQSSVGNEGKCDSPVGGGGS
RGWGSSSSSSTNNFNLNLNPNANPSAWPMLGHDGGGSSGGANTISSPQTAPNLCNPPGPP
PTQTSTCSGANTNSKSSGIGSAWGNIMASDVSESHPTPSTNVSFSSEPQNLKTDGPNQTQ
KQEPPSPIRNLPGWGSAPAGLSPIGQPPPGGSQVNGEDDNSLWGNSGNSKTTSSKEGPGW
DTAWGHGGSGPGNSGGWGEQSSGDWGKQHSEETQGSWDAPSSPPQDSQANHWSRAVSTAG
ASEGSSDSIDGYPRQRDQSSRDKPVPVLPAQELDPRVLCNTGWGQTPVRQHTTWDMDDTK
RKNDAGTESWGSGPSTSSEVQGPSNTTTGPSQRTDSGNKNDVPGSQGASGWGGSVAATHL
PGSSWGELPNNVKHPVGHGGWGNSPSGGATNNIPKNGGQSWGEEKSAGWEDSQGKSTPQG
WGEQPKTSHTWGNSGSNTGDWEEPEESKKSSTNPDWEGESGNWKENQRDWGRSTSGPGIS
GAGGSGGWGESAPQRPCGPPQGWIGKPQDGPSSNSGGGAMGSWGGSSSVKQGAAWGNSKS
EPSNEPTGWEEPSPPSIRRKMEIDDGTSAWGDPGAYNKAVNLWDRNNSGKSQAKVTTGGS
NPSGSNNNHPHTHNHPYHGPPAPLQNHSQNTQNPCPTSGPMDPPVQHQTGQSHIRGPLIA
QGWGDLPSSHTKSESSWREPAPSPVSVDNGTSAWGKPTGSSGGWGDGNPDGYRRSNPTMN
TASCKPAAKPMQDGWGGGGEEISLSGGQWDAEEGDVWNSTASQESNSSCNSWGNASKKAP
QKVKVPVKQEDAWIMKHLIKQLTDMGFPRDPAEEALKSNNMNLDQAMSALLEKKTELDKR
GMGIGGHDFNNGLINKPMSCPRPPLLSKDPSVDPRLPFIDKQMQSGMFGGSGAAQARAMQ
QPQPPPQPPVLPLSSSQPSLRAQVPQFLSPQVQAQLLQFAAKNIGLNPALLTSPINPQHM
TLLNQLYQLQLTYQRLQIQQQMLQAQRNVSGPIRQQEQQVARTINNMQQQIQQHQRQLAQ
ALLMKQQQQQQTPSHSSLHPGGAKSTLDTFPGHPQTPGLSDLQTKEPQSSPNTYSPYALS
GLNPNCMDVGSLPLKDPPQPQSRLSQWTHPNSIESLSGNSSPLEPNLGKHGANLGPPGKP
PQMDDSYNPYSLMSSSESPTSPLVPPESWGPGKNSSDKMANGTNINWPPEFCPGVPWKGL
QNIDPETDPNVTPGSVPSGPTINTNIQDVNRYLLRDRSGGSSPTSSQSEALPPSTDWPVS
AYTSSFSLSPEMDDTGKLSEMKSTWSPGPISHSQPSLSHELWKVPQGPRSSTTAPSRPPP
GLTNTKPSSTWGGNSLGLAQGWSSSYTTAGTTWSTDSSNRTSSWLVLRNLTPQIDGSTLR
TLCMQHGPLITFHLNLTQGNAVVRYSSKDEAAKAQKSLHMCVLGNTTILAEFAGEEEVNR
FFAQSQSLGGTTSWQATPGTNQTRMGGAGSGAAHPIGHSPHWNNNNNGGGGSSSGGGLGA
AGTKTGGELLWGGVQQYSSLWGPPSGEEGRVMGSPTPINTLLPGDLLSGESM
NT seq
5559 nt
NT seq
+upstream
nt +downstream
nt
caagaagaaaagaaaaagaaagaagctgcacagaaaaaggtcacagaacagacaaccaaa
gtgccagactctgtcaagctcgaccccgctccgccactctcccccaccagccctggtgcc
accccccctgcagccccgagcagtggaaatggcaagcgtgccccctctggatgccagccg
caaactttgctccagcagcgctacccgcccagagaggtgcctccgcgcttccgtcagcag
gagcagaagcagctgttaaagaggggccagcctctgccatctgggaccccacctcccccc
accacgggacatcccgacactagtgaatctgcagcagcaacagtagccataacctcatct
ccattctgctcctcctcctcctcagccagcttgcccacagaactgcccccacagagtggc
caaggagcccagtatgataatcccccctggggacatctaccagccaatagaagtgccaca
agtgctgcatcttccaccaatcttagtggctgggataaattgatcattgaccagaaggac
acagaggcttggccctctattaccctcagccaaagccaggcccctccaagaggatgccct
ttggacactgaccctggtcacctgaccagcagcagcagcagtagtacaagcagtagttgt
agtacagtgagtatggccacaggggccaacggtcagacaggccactttcctgccaaccac
cttagcagcaaagccaacagtgggcctagccctgccaatcatactggaaccagcatgctt
tctagccaggttacaaccaatcgtggttggggctctggacctggaccctctcattgtccc
acacagtcctcagtggggaatgaagggaagtgtgacagcccagtgggaggaggaggcagc
agaggttggggttcctcttcatcatcctccaccaacaactttaacttgaacctaaacccc
aatgccaacccatctgcctggcccatgttgggacatgatgggggaggcagctcaggggga
gccaacaccatttcatctcctcaaactgcacccaacctctgtaatcctcctggcccccca
ccaactcagaccagcacctgttctggagccaacactaacagcaagtcctctggtattggc
agcgcatggggtaacataatggcttctgatgtatcagagtcacaccccaccccatccacg
aatgtgtctttcagttcagaacctcagaaccttaaaactgatggaccaaatcagactcaa
aagcaggaacctcccagcccaatccgaaacttgcctggctggggcagtgcacctgcaggc
ttgagtcctataggacagccaccaccaggcggttcacaggtcaacggagaagatgataac
tctttatggggtaacagtggtaactcaaaaacaacttcatcaaaggaaggacctggctgg
gatacagcctggggccatggaggaagtggaccagggaactctggaggctggggtgaacag
tctagtggagactgggggaagcagcatagtgaagagacccagggaagctgggatgcaccc
agctctcctccccaggattcacaagctaatcattggagtagagctgtgagcacagctggt
gctagtgaagggagtagtgacagcattgatggatatccccgacagagagaccagtcatcc
agagacaaaccagttcctgttctccctgcccaggagctagaccccagggttctgtgtaat
actggttggggacagacccctgtacgccagcacaccacctgggatatggatgatactaaa
cggaagaatgatgctgggactgaatcctggggctctggtccatccacttcaagtgaagtg
cagggaccctcaaacactaccacaggcccttcacagaggactgacagtgggaataaaaat
gatgtacctggttctcagggagcttctggttggggtggaagcgtagctgctacacacctg
cccggctctagttggggagagctacccaacaacgtcaagcatcccgttggacatggaggc
tgggggaactctccatcaggaggcgctaccaacaatatacccaagaatggtggtcagtcc
tggggagaggaaaaatcagcagggtgggaggattctcaaggcaagtcaacaccccagggc
tggggagagcaacccaaaacatcccatacctggggcaacagtggaagcaatacaggggat
tgggaggaaccagaagagagcaagaagagttccacgaaccctgattgggaaggagaatct
ggaaactggaaggaaaatcaacgagactggggaaggtcaacttcaggaccagggatatct
ggagctggaggaagtgggggttggggtgaatcagcaccccagcgtccctgtggtccccct
caaggttggataggcaagcctcaagatgggcccagcagtaatagtggaggaggcgccatg
ggctcttggggtggctcaagctcagtgaagcagggtgcagcttgggggaatagtaaatca
gagccctcaaatgagcctacaggctgggaggagccatctccaccctcaatccggcgtaag
atggagatagatgatgggacgtctgcttggggcgacccaggtgcctacaataaggcagtc
aatttatgggataggaacaattcaggaaagtcccaggctaaagttaccacaggaggaagt
aatccctcaggatccaacaataaccacccccacactcacaatcacccctatcatgggcca
cctgcacctttacagaaccatagccaaaacactcagaacccatgtcctaccagtggccct
atggatcctccagtgcaacaccagactggccagtcgcacatcagaggtccgctgatagct
caaggttggggagatttacccagctcccacaccaaatcagaaagctcttggcgggaacct
gcaccctctcccgtcagcgtagataatggcacgtctgcctggggcaaaccgactggaagc
tccggaggctggggagacggcaacccagacggctatcgcaggagcaacccaacaatgaac
actgcatcctgcaaacctgccgccaaacctatgcaagatggatggggagggggaggtgaa
gagatcagcctgtcagggggtcagtgggacgctgaggagggagacgtgtggaatagcact
gcctcccaggagagcaactcttcctgtaactcctggggcaatgcatccaaaaaagcccct
cagaaggtgaaagtccctgtgaagcaggaagatgcctggatcatgaaacatctcatcaaa
cagctgacagacatgggattccctagggatccggcagaggaggctttgaaaagcaacaac
atgaacttggatcaggccatgagtgccctgttggagaagaagacggagctggacaagcgt
gggatggggatcggcggccacgacttcaacaacgggctcatcaacaagcctatgagctgc
ccccggcctccacttctttccaaagacccctcagtagatcctcgcctgcccttcatcgat
aagcagatgcagagtggaatgtttggcggcagtggagcagcacaagcccgggccatgcag
cagccgcagccgcctcctcagccaccagtgctgcctctcagctcctctcagcctagtcta
cgtgctcaagtgcctcagtttctctcccctcaggttcaagcacagctcttacagtttgca
gcaaaaaacattggactgaatcctgcacttttaacctcaccaataaaccctcaacatatg
acccttctgaatcaactttaccagctgcaactgacgtaccagcgtttacaaattcaacag
cagatgttgcaggcacagcgcaatgtttctggcccaattcgacaacaagagcagcaagtt
gcacgtacaatcaataacatgcagcagcagatccaacagcaccagcgtcagctggcccag
gccctgctgatgaaacagcagcaacagcagcaaaccccctcccactcgagcctgcatcct
ggtggagccaaatccaccctggatacatttccaggtcacccccagactccaggcctctcc
gacctgcagaccaaagagccacagtcatcccccaacacctacagcccctatgctctctct
ggactgaatccaaactgtatggatgtgggaagccttcctttgaaggacccaccccagccc
cagtcacggctgtcacagtggacacaccccaactccatcgaaagcctttctggaaactcc
tctcctcttgagcccaacttgggaaagcatggtgccaacctgggccctccggggaagccc
cctcagatggacgactcgtacaacccctacagcctgatgtccagctcggagtctcctacc
agcccgctggttcctccagagagctggggaccgggcaagaacagcagtgacaagatggca
aacgggaccaacatcaactggccgccagagttttgtcctggtgtaccctggaagggcctt
cagaacatagaccctgagactgaccccaacgtgactccaggcagcgtccccagtggtccc
accatcaacaccaacatccaagatgtcaaccgttacctgctgcgggacaggagtggaggc
tcctctcccacttcatctcagagcgaggctctgcctccgtctactgattggcctgtcagt
gcctacactagctcgttcagtctttccccggagatggacgacacaggtaaactgtcagag
atgaaatcaacctggtctccaggccccatctctcacagccagccctctctgtcccacgag
ctttggaaggtcccccagggcccacggagcagcaccactgccccctcccgccccccgcct
ggcctcacaaacacaaagccctcgtccacctggggtggaaactctctgggtctggcacaa
ggctggagcagctcctacaccacagcaggtaccacgtggagtacagacagttccaaccgg
accagcagctggctggttctgaggaacctcaccccacagattgatgggtcgaccctgcgt
acgctgtgcatgcagcacggcccgctcatcacattccacctcaacctgacacagggaaac
gctgtggtgcgctacagctccaaggatgaagctgctaaggctcagaagtccctgcacatg
tgtgtgcttgggaacaccaccatccttgcagagtttgcaggggaagaggaagttaaccgc
ttctttgcacagagccagtcacttggtggcaccaccagctggcaggccactccaggcacc
aatcagacgaggatggggggagccgggtccggagccgctcaccccatcggtcactcacct
cactggaacaacaacaacaatggaggcggcggcagtagcagcggtggcgggctcggagca
gctggaacgaaaacgggaggagagctgctttggggtggagttcagcagtattccagcttg
tggggacccccgagcggagaggagggacgggtcatggggagccccacgccaatcaacacg
ctgctgcctggtgacctgctgagtggagagtccatgtag
DBGET
integrated database retrieval system
