Kryptolebias marmoratus (mangrove rivulus): 108239654
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Entry
108239654 CDS
T05608
Symbol
rc3h1b
Name
(RefSeq) roquin-1 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
kmr03000
]
108239654 (rc3h1b)
04121 Ubiquitin system [BR:
kmr04121
]
108239654 (rc3h1b)
Transcription factors [BR:
kmr03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
108239654 (rc3h1b)
Ubiquitin system [BR:
kmr04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
108239654 (rc3h1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
zf-C3HC4_3
zf-C3HC4
zf-CCCH
zf-C3HC4_2
Prok-RING_4
zf-CCCH_4
FYVE
zf-CCCH_UNK
zf_CCCH_4
NS3_helicase_C
Baculo_IE-1
RING_XB3-XBAT31
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
108239654
NCBI-ProteinID:
XP_017277993
LinkDB
All DBs
Position
LG20:12170251..12184567
Genome browser
AA seq
1123 aa
AA seq
DB search
MPVQAPQWTEFLLCPICTQTFEETVRRPISLGCGHTVCKMCLNKLHRKACPFDQTAISTD
IEQLPVNTALLQLVGGQVPKAQPVALITSPEDTQNYEVARQCVEELALYLKPLSNTRGVG
LSSTTQSMLSRPMQRKLVTLVHCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEGGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLEKGLVAVKTVVHGLVDFIQNHSKKGADPQQPPQHSKYKTYMCR
DMKQKGGCPRGASCTFAHSQEELEKYRKMNKRAITRSGLLPDDNLPIDVAVSRKISPVVN
GGGAPNLPQLVARGTDAVSYEIIRKPVKLDVGSSSVPGSPPDVLDPMSKPGMTMAHHSMA
HPRMPTDHISGVKHLPVVARGSPVYPQPQLPDICYETRPPPASQYEPPQYQTGYPYQQAP
QYVPRDPYIRNPLPPSESGPPYHDPYASYGHPERAYPAPHAGPPFSYPHPPHYDRGRPGT
YSGPPPPPVKMSPAPLDVPPPSAGQANSMYHPEPSVRDRYPPDVYYPQGAQPPPMRTYVR
GSTYSGPQHSLDYLHRRRQELISQLEERKVISPPPFAASPTLSHPFPTDYPTEYGDESSK
NMVKCREPDYAGQYSPWSCETIGSYIGTKDAKPKDVIVPGTMEMMNVEPKGLREPSLEAP
RRSAEVKDDDPIIPFGPQPTVSRFGAISRTSKTGYQTTGPVQAMAATPQNPNSKHMAMPA
EYSYGSHGGWGGASYPAPPTASSSQGHFIDRLPMGAPDREQLKIELQQVNQQITQQTQMH
NMEAASNSLLLQREASALASQTAQTSQSQSAVASQQQQPKWPAGGASAPAVSSEQLSLEL
HQVEREIGKRTREMALQENQVAHDVQQYKMKPAENGQPEHQTQLEEISLALGEVSNGSSS
LQESAVGGSMLSLTTKASALSLCSDSGATGSEMQKNGVVHSCS
NT seq
3372 nt
NT seq
+upstream
nt +downstream
nt
atgccagtgcaagcgccacaatggacagagtttctgctgtgcccaatctgcacacagacg
ttcgaagagactgttcgccggcccatcagcttgggctgtggacatactgtctgcaagatg
tgcctgaacaagttgcaccgcaaggcctgtccctttgaccagacagccatcagcacagac
attgagcagttacctgtcaacacagccctgttgcagttggtgggaggccaggttcctaag
gctcagccagttgccttgatcaccagtccagaagacacacagaattatgaggtggcaagg
cagtgtgtggaggaactggccctctacctcaaacccctcagcaacactcgaggtgtgggt
ctgagcagcacaacccaaagcatgctgagtcgacccatgcagaggaagctggtaactctg
gttcactgccagctggtggaagaagagggccgtgttcgagccatgagggctgcccgctct
cttggagagcgaactgtcacagagctcatcttgcaacaccagaatcctcagcagctctcc
tccaatctgtgggctgctgtccgtgcacgaggttgtcagtttcttggcccagcaatgcaa
gaagaagctctaaagttggtccttcttgctttagaagatggctctgctttgtccaggaag
gtgttagttctctttgtagtccagaggcttgagccacggttccctcaggcctctaaaaca
agcataggccatgtggtacagctcctttatagagcttcctgcttcaaggttaccaaacgt
gatgaagattcatctctgatgcaactgaaagaagagtttcgtacgtacgaagctctgcga
cgcgagcacgactctcagattgttcagattgccatggagggtggattgcgcattgcccct
gaccaatggtcctctctgttgtatggagatcagtctcacaagtcacacatgcagtctatc
atcgataagctgcagactccagcatcttttgctcagagtgtccaggagctgacaattgca
ctgcagaggactggagaccctgccaacctcaacaggctgcgcccccacttagaactactg
gcaaacattgatcccagtcctgatgctcctcctcctacatgggagcagcttgagaaaggg
ttggtggcagtgaaaacagtggtacatggcctggtggacttcatccagaaccatagcaag
aaaggagctgatccccaacaacctcctcagcacagcaaatacaagacatacatgtgccgc
gacatgaagcagaaaggaggatgtcctcgtggagccagctgcacttttgcccactctcag
gaagaattggagaagtatcgtaagatgaacaagcgtgcaataacgcgctcggggctttta
ccagatgacaaccttcctattgatgtagcagtgagccgaaagatttcgcctgtcgtcaat
ggtggcggcgcgccaaatttgccccaactagttgctcgaggcactgacgccgtttcctac
gagatcatccgtaaacctgtgaagctcgatgtaggaagttcaagtgttccaggatcacca
ccggacgtcctggaccccatgtccaaacctggaatgactatggcgcatcattcaatggct
cacccaaggatgccaacagatcacatatcaggagtgaagcatttgcctgtggtagccagg
ggttcaccggtgtatccccaaccacaactccctgatatatgctatgaaactcgcccccca
cctgcctctcagtatgaaccccctcagtaccaaacaggttacccctaccaacaggcacca
caatatgttcctcgagatccatacatccgtaaccctcttcctccgagtgagtcaggaccc
ccctaccacgacccttacgcgagctacggtcatccagagcgagcctacccagcccctcac
gctggcccacctttctcctatcctcacccacctcactacgacagaggtcgccctggaacc
tacagcggcccaccacccccacctgtgaaaatgagtccagcacctctggatgttcccccg
ccgtcagcagggcaggctaactcgatgtaccacccggagcctagtgtccgggatcgatac
ccaccagacgtctactatccacaaggagcccagcctccacctatgaggacttatgtcagg
ggttcaacatacagcggtccacagcacagcctggactacctgcatcgacgtcggcaggag
ctgatatcacagctggaggaaagaaaggtgatctcccctccaccatttgctgcctccccc
actctttcgcatcccttccccactgattacccaactgagtatggggatgagagctccaaa
aatatggtgaaatgcagagagccagactacgcagggcagtactccccctggtcttgtgaa
actattggctcatatattggcacaaaggatgccaaacccaaagatgtaattgttcctggt
accatggagatgatgaatgtggagcctaaaggtctgagggaaccatcactggaggctcct
cggaggagtgcagaagtaaaggatgatgaccccattataccgtttggtccccagcccact
gtgtcacgctttggtgccatctcccgcacttcgaagacaggctatcagactactggcccc
gtgcaagccatggctgccactccccagaaccccaactccaaacacatggccatgccagca
gaatactcatacggaagtcatggaggttggggtggagcgtcataccctgcccctccaact
gcctcctcctctcagggacactttattgatcgcctgcccatgggagccccagacagagaa
cagttaaagattgagctgcagcaggtcaaccagcagatcactcagcagacccagatgcac
aacatggaggctgccagtaactctttactcctgcagagggaagcaagtgcattggcaagt
cagactgcgcagaccagccagagccagtcagctgtggcctcacagcagcaacagcccaag
tggccagcagggggagcaagtgcaccggctgtgtctagcgagcagctgagcttggagctc
caccaggtggagagagaaattggcaagaggacccgtgagatggctttgcaggaaaaccaa
gtagcccatgatgttcagcagtacaaaatgaagcctgcagagaatggacaaccagagcac
cagactcagctggaagaaatctccttagctcttggcgaggtgtccaacggctccagcagc
ctgcaagaaagcgcagtgggcgggtccatgctgtcactgacaaccaaggcgtctgcgttg
agcttgtgttctgattcaggtgccactgggtcagagatgcaaaagaatggcgttgtccat
tcctgctcttag
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integrated database retrieval system
