Kryptolebias marmoratus (mangrove rivulus): 108240134
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Entry
108240134 CDS
T05608
Symbol
cdc40
Name
(RefSeq) pre-mRNA-processing factor 17
KO
K12816
pre-mRNA-processing factor 17
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108240134 (cdc40)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
kmr03041
]
108240134 (cdc40)
Spliceosome [BR:
kmr03041
]
Complex C
Other components
Step II factors
108240134 (cdc40)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
EIF3I
WDR55
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_CAF1B_HIR1
ANAPC4_WD40
Beta-prop_WDR75_1st
Beta-prop_EIPR1
WD40_RFWD3
Beta-prop_RIG_2nd
Beta-prop_TEP1_C
Beta-prop_DCAF4
Beta-prop_SPT8
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_NWD2_C
WD_LRWD1
Beta-prop_Vps41
PQQ_2
Motif
Other DBs
NCBI-GeneID:
108240134
NCBI-ProteinID:
XP_017278835
UniProt:
A0A3Q3FP47
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Position
LG19:complement(10145484..10162092)
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AA seq
581 aa
AA seq
DB search
MSAAIASLASYGSDSDSENESESTTSTEKVDSVDPDATAHLTPLQSGHTMSLSVLNSAPE
VAVKEAVETGIHLDPSLKEVTYNPTFETMFAAEFGPVNPYTTQQMAAPRNMLSGYAEPAH
VNDFMFEQQRRTFSSFGYALDPSVDTHQLSSTSYIGAVDEAEKNKGLTVFETGQKKSEKR
KKIKGGDAGEIDNFLGPWAKYVDEKDVAKPSEEEQKELDEITAKRQKKGKNEEEAPGEEK
TILHVKDMYDYQGRSYLHVPQDVGINLRSAEAPDKCYLPKKQIHVWSGHTKGVSAIRLFP
SSGHLLLSSSMDCKIKLWEVYGERRCLRTFIGHSKAVRDICFNNTGTQFLSAAYDRYLKL
WDSETGQCISRFTNRKVPYCVKFNPDEDKQNLFVAGMSDKKIVQWDIRTGEVVQEYDRHL
GAVNTITFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKWLAC
QSMDNQILIFGAQNRFRLNKKKVFKGHMVAGYACQVDFSPDMSYVVSGDADGKLNIWDWK
TTKLYHRIKAHDKVCISALWHPHETSKVITCGWDGQIKLWD
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atgtctgccgccatcgcttccctcgcttcttacggtagcgattccgactcagaaaatgag
tctgaatctactaccagtaccgagaaagttgactcggtggatccggacgctacggctcac
cttacgcccttacagtctgggcacactatgtctttgtctgttttaaattcggcccctgag
gtcgccgttaaggaggctgtcgaaactggcatacacttggacccttcattgaaagaagtc
acatataaccccacatttgaaactatgtttgcagctgagtttgggccagtaaacccttac
acgacccagcagatggctgcccccagaaacatgttgtctggttatgcagaacctgcacac
gtcaatgactttatgtttgaacaacaaagaaggaccttctcctcatttggttatgcttta
gatccttctgttgacacacaccagttatcctctaccagctacattggtgcagtggatgag
gctgagaaaaacaaagggctgactgtgttcgaaactggtcagaagaagtcggagaaacgg
aagaagatcaaaggtggagatgcaggagaaatcgacaacttccttggaccatgggcgaaa
tatgtggatgagaaagatgtggccaagccgtcagaggaagagcagaaagaactggatgaa
atcacagctaaaaggcagaagaaaggaaagaatgaggaagaggctcctggagaggagaag
acaattcttcatgttaaagacatgtatgactaccagggcaggtcatacctccatgtccca
caggatgtgggcatcaacctgcggtctgcagaagctccagataaatgttacctcccgaag
aaacagattcatgtctggtctggacacaccaagggtgtcagtgctatccgattattcccc
agctctggacatctgctgctctcctcctccatggactgtaagatcaagctgtgggaggtg
tatggcgagcggaggtgtcttcgtacatttatcggtcacagcaaagcggtgcgggacatt
tgcttcaacaacactggaacccagtttctcagcgctgcgtatgatcgataccttaaactg
tgggactctgagacaggccagtgtatctcccgcttcaccaacaggaaggtgccgtactgc
gtcaagttcaacccagacgaagacaagcagaatctttttgtggctggcatgtcggataaa
aagatagttcagtgggacatcaggacaggcgaggtggttcaggagtacgatcgccacctg
ggagctgtcaacaccatcacctttgtcgatgagaatcgccggtttgtcagcacgtcagac
gacaagagtcttcgagtttgggagtgggacattcctgtggacttcaagtacattgctgag
cccagtatgcactcgatgccagctgtgactctatctcccaacggtaaatggctggcatgc
cagtctatggataaccagattcttatcttcggagcccaaaaccgcttcaggctgaacaaa
aagaaagtcttcaagggccacatggtggccggctatgcctgccaggtggacttctctcct
gatatgagctacgtggtgtccggggacgcagatggaaagctcaacatctgggactggaag
accaccaagctctaccacaggatcaaggctcacgacaaggtgtgcatcagcgccctgtgg
catccgcatgaaacctccaaggtgatcacctgtggatgggacggacagatcaaactctgg
gactaa
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