KEGG   Kryptolebias marmoratus (mangrove rivulus): 108240285
Entry
108240285         CDS       T05608                                 
Symbol
snrnp40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
kmr  Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:kmr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    108240285 (snrnp40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:kmr03041]
    108240285 (snrnp40)
Spliceosome [BR:kmr03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    108240285 (snrnp40)
 Complex C
   U5 SnRNP specific factors
    108240285 (snrnp40)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_TEP1_2nd EIF3I WDR55 Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_WDR75_1st Beta-prop_TEP1_C NBCH_WD40 Beta-prop_EIPR1 Beta-prop_SPT8 ANAPC4_WD40 WDR90_beta-prop_4th Beta-prop_SCAP Beta-prop_IFT122_1st Beta-prop_DCAF4 WD40_MABP1-WDR62_1st WD40_RFWD3 Beta-prop_RIG_2nd Beta-prop_IFT140_1st Beta-prop_Vps41 Beta-prop_WDR19_1st Beta-prop_WDR75_2nd Beta-prop_NWD2_C Beta-prop_WDR35_TULP_N Cytochrom_D1 Beta-prop_IFT140_2nd WD40_like Beta-prop_Nup120_160 WDR54 Beta-prop_VPS8 Beta-prop_IP5PC_F
Other DBs
NCBI-GeneID: 108240285
NCBI-ProteinID: XP_017279143
UniProt: A0A3Q2ZMC0
LinkDB
Position
LG5:11496219..11500804
AA seq 347 aa
MIEPMKRPGDMAVVASALKRPRMELVAAAQSQQLVASGPPRTSSLQAPIMLMCGHEGEVY
CCKFHPNGATLASSGFDRLILLWNVYGDCENYATLKGHSGAVMELHYNTDGSLLFSASTD
KTVGVWDSETGERVKRLKGHTSFVNTCYPARRGPQLVCTGSDDGTIKLWDIRKKAAVHTF
QNTYQVLAVTFNDTSDQILSGGIDNDIKVWDLRQNKLIYNMHGHGDSVTGLSLSSEGSYL
LSNSMDNTVRIWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSTDGSKIAAGSADRFVY
IWDTTSRRILYKLPGHAGSVNEVVFHPEESVVLSASSDKRLYMGEIQ
NT seq 1044 nt   +upstreamnt  +downstreamnt
atgatcgagcccatgaaaagacccggagacatggcggtggtcgcttccgccttgaagcga
ccccggatggagctggtggcggcggctcagtctcagcaactcgtggcctcggggcctcct
cggacctccagcctccaagctcccatcatgttgatgtgtggccacgagggcgaggtctac
tgctgcaagtttcaccccaacggagccacgttggcctcctcgggattcgacaggctcata
ctgttgtggaacgtgtacggagactgcgagaactacgccactctgaagggtcacagcgga
gccgtgatggagctgcattacaacacggatggcagcctgttgttctcagccagcacagac
aagaccgttggcgtgtgggacagcgagacaggtgagagggtcaagcgtctgaagggccac
acctcctttgtcaacacctgctacccggctcgccgagggccccaactggtctgcacgggc
agcgatgatgggacgatcaagctgtgggacattcgcaagaaggcggccgtccacactttc
cagaacacctaccaggtcctggccgtgacgtttaatgacaccagcgatcagattctgtct
ggaggaatcgacaacgacatcaaggtgtgggacctgcggcagaacaagctgatctacaac
atgcacggccacggcgactcggtgaccggactcagcctgagctccgagggctcgtacctt
ctgtccaactccatggacaacacggtgcggatttgggacgtgcggccgtttgcgcccaag
gagagatgcgtgaagattttccaaggcaacgttcacaactttgaaaagaacttgctgagg
tgctcctggtccaccgatggcagtaaaatagctgcaggctcagccgacagatttgtgtac
atctgggacaccacgtcacgtcgaatcctgtacaagctgccgggtcacgctggctccgtt
aacgaggtggtcttccacccagaggagtctgtcgtgctttctgcctccagtgataaacgt
ctgtatatgggagaaattcaataa

DBGET integrated database retrieval system