Kryptolebias marmoratus (mangrove rivulus): 108240547
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Entry
108240547 CDS
T05608
Symbol
rbm22
Name
(RefSeq) pre-mRNA-splicing factor RBM22
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108240547 (rbm22)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
kmr03041
]
108240547 (rbm22)
Spliceosome [BR:
kmr03041
]
Complex B
Other components
Prp19-related factors
108240547 (rbm22)
Complex C
108240547 (rbm22)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
zf-CCCH_RBM22
RRM_1
zf_CCCH_4
Torus
zf-CCCH_2
Nup35_RRM_2
RRM_occluded
zf-CCCH
RRM_3
zf-CCCH_4
RRM_YTH1
zf-CCCH_10
zf-CCCH_12
zf-CCCH_PARP12
Motif
Other DBs
NCBI-GeneID:
108240547
NCBI-ProteinID:
XP_017279590
UniProt:
A0A3Q2ZQ23
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All DBs
Position
LG9:complement(16194496..16200058)
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AA seq
427 aa
AA seq
DB search
MATSLGSNTYNRQNWEDADFPILCQTCLGENPYIRMTKEKYGKECKICARPFTVFRWCPG
TRMRFKKTEVCQTCSKMKNVCQTCLLDLEYGLPIQVRDTGLSIKDEVPRSDVNKEYYTQN
MEREIANSDGTRPVGQLGKATSSSDMLLKLARTTPYYKRNRPHICSFWVKGECKRGEECP
YRHEKPTDPDDPLADQNIKDRYYGINDPVADKLLKRASTMPRLDPPEDKSITTLYIGGLG
DNVTDGDLKSHFYQFGEIRTITIVQRQQCAFIQFATRPAAEMAAEKSFNKLIINGRRLTV
KWGRSQAARGKEGVKDGVSEMGTRLDPVPGLPGALPPPPALDEEAPANYFNLDPSSSPAI
MNIALPPPPGINPPPPGFGPPMFHPMGPMAPPVPPPMTMRPPGTIHYPSQDPQRMGAHAA
LASRHAE
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atggcgacttccctgggctccaacacgtacaacagacagaactgggaggacgcggatttt
ccaattctgtgtcagacatgtttaggagaaaacccatacatccgaatgaccaaggagaaa
tatgggaaagaatgcaagatttgtgctcggccctttaccgtgttcagatggtgcccgggc
acacggatgcgtttcaagaagacagaagtttgtcagacctgtagtaaaatgaaaaacgtt
tgtcagacatgtcttctggaccttgagtacggtttgcctatccaggttcgagataccgga
ctctcgataaaagatgaggttcccaggtcagatgtgaataaagagtactacacacagaac
atggagagagagatagccaattcggacggcacccggccagtgggccagcttggcaaggcg
acgagctccagcgacatgttgctgaaactggctcggaccaccccgtactacaagagaaac
cggccccatatctgctccttctgggtgaagggagagtgtaagagaggggaggagtgtccc
tacaggcatgagaagcctaccgatcctgacgaccctctggccgaccagaacattaaagat
cgttactatggcatcaacgatccggttgctgacaaactgctgaagcgggcctcaactatg
ccccgactggatccaccagaggacaaatccatcaccaccctttacatcggagggttggga
gataatgtcacagacggagatctgaagagtcacttttaccagtttggtgaaattcgaacc
ataaccatagtccagcggcagcagtgtgccttcatccagttcgccacgcggccggcggct
gagatggccgcagagaagtccttcaacaaactaatcatcaacggacggaggctgactgtc
aagtggggaagatctcaagcagcaagaggcaaagagggtgtgaaggatggtgtgagtgag
atgggtaccagactggatcctgtacctggactgcccggagctctgcccccaccaccagct
ctagatgaggaggcgcctgcaaactacttcaacctcgaccccagctcctctcctgccatc
atgaacattgctttgcccccacccccaggcataaacccaccccctccaggttttggcccg
ccaatgtttcaccccatgggtcccatggccccacccgtgccccctcccatgacgatgagg
cccccagggacaatccattatccttcccaggatcctcagcgcatgggtgctcacgccgca
cttgcctcccgtcacgccgagtag
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