Kryptolebias marmoratus (mangrove rivulus): 108240692
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Entry
108240692 CDS
T05608
Symbol
herc4
Name
(RefSeq) probable E3 ubiquitin-protein ligase HERC4
KO
K10615
E3 ubiquitin-protein ligase HERC4 [EC:
2.3.2.26
]
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
108240692 (herc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
kmr04121
]
108240692 (herc4)
Enzymes [BR:
kmr01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
108240692 (herc4)
Ubiquitin system [BR:
kmr04121
]
Ubiquitin ligases (E3)
HECT type E3
108240692 (herc4)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RCC1
HECT
RCC1_2
Motif
Other DBs
NCBI-GeneID:
108240692
NCBI-ProteinID:
XP_017279852
UniProt:
A0A3Q3FDH0
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All DBs
Position
LG22:27658950..27668861
Genome browser
AA seq
1042 aa
AA seq
DB search
MLCWGNASYGQLGLGGIDEEIVVEPRRCEFFLGKRVSDVGCGRKHTAFLLEDGTVYTCGC
NDLGQLGHEKSRKKPEQVVALDAQIIVAVSCGESHTLALNDKGQLFSWGLGADGQLGLNN
FEECVRVPRNIKSLSDVQITQIACGYWHSLALSKGGQIFSWGQNRLGQLGLGFIGQSISS
PQMIQSLKGIPFAQISAGGAHSFALTLSGAVFGWGCNKFGQLGLNDTNDRPYPALLKSLR
SHRVIYVSCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTNHEINPRKVFELMGNVVTQIA
CGRQHTLAFTPASLKMDSFGLGGNGQLGTRSTSNRKSPAPVKGPWVAATTETDQEEKCFV
KRIYAGGDQSFAHYCSNRQDGAASREDPQGKICCLNQETLQKWLNYSAGRLPLEISNEID
LLFSSASCLNGSFLSMSHPDHYSTSAKCSGLDLDSARLLFLRLIQKDKPEISQQVAASLE
KHLIPGLSNSPPDIEALRLYLTLPECPLFADRSNYITITIPFAKSVLSLKEAPLKVLGNW
WSAFEAAAFQRLVDSYKDVVVYLLQMHKMGIPATEQRIFSSFLDTALRFLEVLHKVNEKA
GNIIRYDKFYIHELNDLVDIKNDYVTWVQRQMYQMGRDGVVNLCRYPFVFDAVAKTALLQ
TDAVLQMQMAVDQAQLQNFSSMFLPAVESVNPCLILIVRRENIVGDTMEVLRKSKNVDYK
KPLKVVFVGEDAVDAGGVRKEFFLLIMKELLDPKYGMFRYYEESRLIWFSHKTFEDFDLF
NLIGLICGLAIYNLTIVELNFPLALYKKLLKKKPTLDDLKELMPDVGRSLQELLDYPEDD
VEETFCLNFTITEDNYGVTEVLDLVPNGENIDVNKSNRQDFVSAYVDYVFNSSVAPLFEG
FHAGFHKVCGGRVLDLFQPSELQAMIIGNTNYDWTELEKGTEYKGEYWAEHPTIKLFWEV
FHDLPLEKKKQFLLFLTGSDRIPILGMKSLKLVIQPTGGGEQYLPVAHTCFNLLDLPKYT
SLETVREKLLQAIDHNQGFNLA
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atgctgtgctggggaaacgcttcctacgggcagctgggtttgggagggatcgacgaggag
attgtcgtcgagccgagaagatgtgaattcttcctcgggaagcgagtgagcgacgtgggc
tgcggccggaagcacacggcattcctgctggaggacgggaccgtgtacacctgcggctgc
aacgatctgggacagctgggacacgagaagtccagaaagaaaccagagcaggtcgtggcg
ctggacgctcagatcatcgtggcggtgtcgtgcggagagtcccacacgctcgccctgaac
gacaaaggccagctgttctcctggggtctgggagccgacggacagctgggcttaaataac
tttgaggaatgtgttcgagtccctcgaaacatcaagagtttgtcagatgttcaaatcact
cagatagcctgcgggtactggcactccctcgcactttcaaaaggtggccaaatcttctcc
tggggccagaatcgattaggtcagcttgggttagggtttattggacagagcatttcctct
cctcagatgattcagtctctgaagggaattcctttcgctcagatctcagcagggggcgct
cacagcttcgccctcaccctctcaggagccgtcttcggctggggctgcaacaagtttggc
cagctgggtctcaacgacacgaacgatcggccttatccagccctcctgaagtccctgagg
tctcacagagtgatttacgtctcctgtggagaagatcacacagctgcgctgacaaaggaa
ggaggtgtgttcaccttcggagcaggaggatacggacagctcggccacaactccaccaac
catgagatcaacccgagaaaggtgttcgagctgatgggaaacgtggtcacacagatcgcc
tgtggaaggcagcacacgctggccttcacacccgcctctttaaagatggattccttcgga
ctcggcggtaacgggcagctcgggacgcgctccaccagcaacaggaagagccccgccccc
gtcaaaggaccctgggtcgccgcgacgaccgaaactgaccaggaggagaaatgtttcgtg
aaaaggatttacgccggaggagatcagagctttgctcattactgcagcaaccgtcaggat
ggagctgcgagcagagaggatcctcagggaaagatctgctgcctgaaccaggaaactctg
caaaaatggctgaattactcggcaggaagactcccgctggaaatctccaatgaaatcgac
ctgctattctcctcggcgagctgcctgaacggatccttcctgtcgatgagtcatcccgat
cactacagcaccagcgccaagtgttcggggctggacctggactctgctcgcctcctcttc
cttcgactcattcagaaggacaagccggagatttcccaacaggtcgctgccagcctggag
aaacacctgattcccgggttgagtaactcccctccagacatcgaagccctgaggctttac
ctcacgctcccagaatgccctctgttcgccgaccgcagcaactacatcaccatcaccatc
ccgtttgccaaaagcgtcctgagcctgaaagaggctccgctgaaggtgttaggaaactgg
tggtccgccttcgaagccgccgctttccagaggttggtggattcctacaaagacgtggtc
gtctacctgctccagatgcacaagatgggcattccagcgacggagcagagaatcttctcc
tccttcctggacacggcgctccggttcctggaggtcctgcacaaggtgaacgagaaagca
ggaaacatcatccgctacgataagttctacattcacgagttgaacgacttggtggacatc
aaaaacgactacgtcacgtgggttcagaggcagatgtaccaaatgggtcgggacggagtg
gtcaacctctgcaggtaccccttcgtgttcgatgccgtggccaaaactgcgctgcttcag
acggacgccgtcctccagatgcagatggccgtggatcaggcgcagctgcagaacttcagc
tccatgttcctgccggctgttgaatccgtcaacccgtgtctcatcctcatcgtccggagg
gaaaacatcgtcggagacacgatggaggtcctcaggaaatcgaagaacgtcgactacaag
aagccgctgaaggtggtgtttgtgggagaagatgccgtcgatgcaggaggcgtcagaaaa
gagttcttcctcctgatcatgaaggagctgctggatcccaagtatgggatgtttcggtac
tacgaggagtccaggctcatctggttttcacacaagacgtttgaggacttcgacctgttt
aacctcatcgggctcatctgcggtctggccatctacaacctcaccatcgtggagctcaac
ttccctttggctctttacaaaaagctcctgaagaagaagccgacactcgatgacctaaag
gagctgatgccagatgtggggaggagtctgcaggagctgctggactacccagaggacgac
gtcgaggaaaccttctgcttgaacttcactatcacggaggacaactatggtgtcacggag
gtcttggatctggtgccgaatggtgagaacatcgacgtcaataagtcaaacaggcaggac
ttcgtcagcgcctacgtcgactacgtcttcaactcgtcggtggctccgctcttcgagggc
ttccacgccggcttccacaaagtctgcggcgggagagttttagacctgttccagccgagt
gaactacaggccatgatcatcggcaacaccaactacgactggacggagctggagaagggc
accgagtataaaggggagtactgggccgagcatccgaccatcaagctcttctgggaggtc
ttccacgatcttccgctggagaagaagaaacagtttctgttgtttctcacaggaagcgac
cgcatcccgatcctcggcatgaagagcctcaaactggtgatccagccgacgggcggaggg
gagcagtacctgcccgtcgcccacacctgcttcaatctgctcgacctgcccaagtacacc
agtctagaaacggtccgagagaaacttttacaagcgatagatcacaatcaaggcttcaac
ctggcctga
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