Kryptolebias marmoratus (mangrove rivulus): 108240711
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Entry
108240711 CDS
T05608
Symbol
prpf40a
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108240711 (prpf40a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
kmr03041
]
108240711 (prpf40a)
Spliceosome [BR:
kmr03041
]
Complex A
U1 snRNP components
U1 related factors
108240711 (prpf40a)
Complex B
108240711 (prpf40a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
Motif
Other DBs
NCBI-GeneID:
108240711
NCBI-ProteinID:
XP_017279879
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All DBs
Position
LG6:complement(10131793..10147937)
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AA seq
905 aa
AA seq
DB search
MAQTMTWKTEAILKSSSSEASTGQSQAASYPAVPPAAIPPPYMAPPGIPPHYPPMGIPPM
AQRPPSMTPMPPGIMPPGIMPPMAAPPMGQMPGMMPPMMPGLMIPPRIPAAAVQPTGPPG
VDTTTAAPGTTSTTNGSPQEEQPKKKSVWTEHKSLDGKTYYYNTETKQSTWEKPDELKSP
AEQLLSKCPWKEYKSDTGKPYYYNSQTKESRWTKPKELEDLEAMIKAEENGTTEVVAPGT
TAAPAVQADNTATMATVMEVETAAAVVSEEPQSQATMNQTAEVKAAEAPVTSSESAVVTE
STASVEVKEERLEPVKKTYKWNTKEEAKQAFKELLKEKGVASNSSWEQAMKLIINDPRYS
ALPKLSEKKQAFNAYKVQTEKEEKEEARIKYKESKETFQRFLENHEKMTSTTRYKKAEQM
FNELEVWSCVPERDRLEIYEDVLFYLAKKEKEQAKQLRKRNWEALKNILDNMANVTYRTT
WSEAQQYLLDNPTFAEDEELQNMDKEDALICFEEHIRALEKEEEEEKQKSLLRERRRQRK
NRESFQKFLDELHDHGQLHSMSSWMEMYPTLSSDMRFANMLGQPGTTSGPVTRDCTRSTP
LDLFKFYVEDLKARYHDEKRIIKDILKDKGFSVEVNTSFDDFGSVISSDKRATTLDAGNI
KLAFNSLLEKAEAREREREKEEARKMKRKEAAFKNMLKQATPPLEPEVTWEEIRDRFLKE
PAFEDVTLESERKRIFKDFMHVLEHECQHHHSKTKKHSKKSKKHHRKRSRSRSASESEDE
EYHKKKKRSQSKSPSERSSSGESERSYKKSKKHKKKGKRRRHKSASPDSDSEKKGRERDG
KRDRESEKDKENDKSRGKSRSESKQKSPKKKGAKEEGGWDTSGSELSEGELEKRRRTLLE
QLDAP
NT seq
2718 nt
NT seq
+upstream
nt +downstream
nt
atggcacagactatgacctggaagactgaagctatattaaaaagctcttcgtcagaggct
agtaccgggcagagccaagcggcgtcttatccagctgtacccccagcagcgataccgccc
ccatacatggctccaccaggaataccgccccactatcctcccatgggaataccccccatg
gcccagcgaccacccagcatgactccaatgccaccgggaataatgccccccggcataatg
cctcccatggctgcaccaccaatgggacagatgccaggcatgatgccacccatgatgcca
ggattgatgataccccctcgcatcccagctgcagccgtacaaccaacgggaccgcctggt
gttgacactacaacagctgcacctgggacaactagtactacaaacggatcgcctcaggaa
gaacagccaaaaaagaagtctgtgtggacagaacacaaatcactggacgggaagacctat
tattacaacacagagacaaaacaatccacgtgggagaagccggatgaactcaaatctcct
gcagagcaattgctgtctaaatgtccatggaaggagtacaagtcagacacagggaagcct
tattattataactctcagacaaaggagtccaggtggaccaaacccaaagagctggaagat
ctggaagctatgatcaaagcagaagagaatggaaccacagaggtcgtggcccctggaacg
actgcagcccccgcggttcaagccgataatacggccactatggcgacagtaatggaggtg
gaaactgcagcggcggtagtctcagaggaaccacagtcccaggcgaccatgaatcaaaca
gctgaggtcaaggctgcagaagcacctgtgacgtcctctgagagcgcagtcgtcacagag
agcacagccagtgttgaagtcaaagaagagcggctcgagcccgtgaagaaaacctacaag
tggaacacgaaagaagaagccaagcaggccttcaaggagctgctgaaggagaagggtgtg
gcatccaactcttcctgggaacaggccatgaaactgatcatcaatgatccccgctacagt
gctcttcccaagctgagcgagaagaagcaggcgtttaatgcctacaaagtccaaacggag
aaggaggagaaggaagaggccagaattaaatacaaggagtccaaagagacgttccagagg
ttcttggagaaccatgagaagatgacatccaccaccagatacaagaaagcagagcaaatg
tttaatgagcttgaagtgtggagttgtgttcctgagagagaccggctggagatctacgag
gacgtcttgttctaccttgctaaaaaagagaaggagcaagcaaagcagctgagaaagagg
aactgggaagctctgaagaacatcctggacaacatggccaacgtgacataccggaccacc
tggtctgaagctcagcagtatctgctggacaaccccacgtttgctgaggatgaggagctg
cagaatatggataaagaggatgccctcatttgttttgaggagcacatccgagcactggag
aaggaggaggaagaagagaaacaaaagtctcttcttagggaaagaagacgacagcgcaaa
aacagggagtccttccagaaatttctggacgagctccacgaccacggccagcttcactcc
atgtcctcctggatggagatgtacccgaccctgagctcagacatgcgcttcgccaacatg
ctgggccagcctggtacgacctcgggccccgtcacacgtgactgcacacgctccactcct
ttggacctcttcaaattctacgtggaagacttgaaagctcgttaccacgatgaaaaacga
ataatcaaagacattctcaaggataaaggattctcggttgaagtcaacaccagcttcgat
gactttggatcagtcatcagctcagacaagagagccaccactctggatgctggaaacata
aagctggccttcaacagtttgctggagaaagccgaagccagagagcgggagcgggagaag
gaggaggcccgcaagatgaaaagaaaagaagccgctttcaagaacatgctgaagcaggcc
acgccaccgctggagcccgaggtcacgtgggaggaaatcagagatcggttcctgaaagaa
cccgcttttgaagatgtaacactggagtcggagaggaaaagaatattcaaagacttcatg
cacgtcttggagcacgagtgccagcatcaccactccaagacaaaaaagcattcgaagaag
tccaagaagcaccacaggaaacgatctcgctctcgatcggcctcggagtctgaggatgag
gagtaccacaagaagaagaagaggtcgcagtccaagtctccctcagagcgatcatctagt
ggagagtcagagagaagctataaaaagtccaaaaagcacaagaagaagggcaagaggagg
cgccacaagtcggcctcgccggattctgacagcgagaagaaagggcgcgagcgcgacggc
aagcgcgacagggagtcggagaaggataaagagaacgacaagtctcgggggaaatctcgc
tccgagtccaaacagaaatctcctaaaaagaagggagccaaagaggagggcggctgggac
acgtcaggcagcgagctgagtgaaggagagctggagaaacggaggagaactttactggaa
cagctggacgcaccttga
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