Kryptolebias marmoratus (mangrove rivulus): 108240763
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Entry
108240763 CDS
T05608
Symbol
scn1laa
Name
(RefSeq) sodium channel, voltage-gated, type I-like, alpha isoform X1
KO
K04834
voltage-gated sodium channel type II alpha
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
kmr04040
]
108240763 (scn1laa)
Ion channels [BR:
kmr04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
108240763 (scn1laa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
IQ_SCN5A_C
PKD_channel
GPHH
PFF1_TM
Lustrin_cystein
Zip
ATP-synt_B
Rotamase
Motif
Other DBs
NCBI-GeneID:
108240763
NCBI-ProteinID:
XP_017279978
LinkDB
All DBs
Position
LG6:11103050..11129731
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AA seq
1878 aa
AA seq
DB search
MLIMLTILVNCGFMTLSTQPDWIKNVEYTFTAIYTAEFLVKVLARGFCIGKFTFLRDPWN
WLDFFVIVLAYVTEFSKEIGNLSALRTFRVLRAFKAISVIPGLKTIVAALFQSVKKLANV
MILTVFCLSVFALVGLQLFMGALKNKCIRIPDKVEKASGVNLSLDNNVTLAYKEDKRNYY
YLPEKRDPLLCGHSSASGQCPDGFQCYKFGSNPDYGYTSFDNFGWAFLSLFRLMTQDCWE
YLYQQTLRAIGKPYMVFFVLVIFLGSFYLINLILAVVAMAYEEQSQATIRKAQEKEEEYE
AMLDQLRQQQEDFQAIANAKSEDKETINKGGATESSSDASKLSSKSAKERCNRRKKRKEE
EKEEAKIPKSDSLDSMTKARFRFSVDGNMLSYDMKCSPTHQSFLSFRGPLLSSRRNSKTS
LFSFQSQAHDASSENEFADDENSIFEDNLSQRGSLFHAQKCDQRSSSMSHCSFLPHLRFQ
PNNIRHSSVDCNGVVSLVDGNSHPSSPPMGLLLPKVTLDMASTGDNADTTDTEYRRSSEG
NYGEFLDLLEGPEFRQRAQSIASVITSTIEELEESRQKCPPCWYKFANTFLIWEFCPMWL
KIKNRVKLIVLDPFMDLGITICIILNTLFMAMEYHPMKPWFQKMLTVGNLVFTGIFTTEM
VLKIIALDPYFYFQVGWNIFDAVIVCLSLIELGLSNVKGMSILRSFRLLRVFKLAKSWPT
LNKLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKQYKDCVCKISEDCVLPRWHMA
DFFHSFLIVFRVLCGEWIETMWDCMQVAGVHTCLILYMMIMVIGNLVVLNLFLALLLSSF
SADNLAAVDDDSEMNNLQIAIGRIRRSNAYIKSLLRSCCNSLCLRDKKKKKIEDQSLDEL
HKPFGRNGVPSHALKDFSRDGNGDVTGVDKAGDKYIVNSKSDDSMLSFINNPSLTVSVPI
AAEESDFEMLNTEDFSSTSTNIPECHVAIDDDGQSSSSEGSTVVPLEDEVSNHDSDCEVK
KEPKDCFTAGCVQKFKCCQVNVNVGFWKLWWTFRKSCYRIVVHSWFESFIILMILLSSGA
LAFEDVYLEQRKIIKVMLEYADKIFTYIFILEMLLKWVAFGFAKYFRNAWCWLDFLIVGV
SLVSLVANALEYSDLGAIKSLRTLRALRPLRALSRFEGMRVVVNALMGAIPSIFNVLLVC
LIFWLIFSIMGVNLFAGKFYSCMNTTTEKALDISVVKNRNDCIKITNITEVNNTVRWKNL
RVNYDNVAMGYLALLQVATFKGWMDIMYAAVDSPASQDEQPEYERNFVMYVYFVVFIILG
AFFTLNLFIGVIIDNFNQQKKKFGGQDIFMTEEQKKYYNAMKKLGSKKPSKPIPRPLNEV
QGHIFDLVTKQAFDVVIMVLIWLNMVTMMVETEDDNEYKKEVLKNINIVFIAVFTGECLL
KMVALRQYFFMNGWNIFDFIVVILSIVGTCLADLVEKYFVSPTLFRVIRLARIGRVLRLV
KSAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFAYVKREKGIDDLFNFETF
GNSMICLFQITTSAGWDGLLAPMLNTDDDCNKEMEHPGTGGKGDCGKVGVGIGFFVSYII
ICFLIVVNMYIAVILENFGVATEESTDPLSEDDFEMFYEVWERFDPHATQFVKYNLLSEF
ADALNPPLRIPRPNRKTLLSMDLPIVSGDRIHCLDILFAFTKRVLGESAEMDNLRGQMEE
RFMASNPSKLSYEPITTTLRRKQEDLSAVVIQKAYRHFVRRNKLSNVLNLDIQNDEEVSD
EEDNLTEPPQKISSADKTEPTASTASSSSCDSQSVTTNGKNKYDKDRSEKEVESKDIKEQ
DTQKNTQNIGDEEKTLKE
NT seq
5637 nt
NT seq
+upstream
nt +downstream
nt
atgttgatcatgttgactatcctcgtcaactgcggattcatgaccctatctacacagcct
gactggataaagaatgtggaatacacatttactgcaatctatacagccgagttcctggtt
aaggttttagccagggggttctgtataggaaagttcacgtttctaagagatccctggaac
tggctggatttctttgtcatcgtcttggcgtatgtcactgagttttccaaagaaattggc
aatttgtcagctcttcgaacgttcagagtgctaagagcattcaaagcaatttcggtcatc
ccagggctgaagacgattgttgctgcattgtttcagtccgtgaagaagcttgctaatgta
atgatcctgaccgttttctgcctgagcgtctttgcactagtaggattgcagctgttcatg
ggtgctttaaagaacaagtgtattaggatacctgataaggttgaaaaggcatctggggtt
aacctttcacttgataacaatgtaactttggcttacaaggaagacaaacgtaattattac
taccttccagaaaaacgagatccattgctttgtgggcatagcagtgcatctggacagtgt
ccagatggatttcaatgctataaatttggaagtaacccagactatggttacacgagcttc
gacaacttcggttgggccttcctctctctgtttagactgatgacacaggattgctgggaa
tacctttaccaacagactttgcgagctattgggaaaccctacatggtcttttttgtcttg
gtaatttttctcggttccttctacttgatcaacctgattttggctgtagtagctatggcc
tatgaggagcagagtcaggccaccatcaggaaagctcaggaaaaggaagaggaatacgag
gcgatgcttgaccagctcagacagcagcaagaggattttcaggcaatagcaaatgctaag
tcagaagataaagagaccatcaacaaaggtggtgccactgagagttcctctgacgcctct
aagctgagctccaaaagtgccaaagagaggtgtaacaggagaaaaaaaagaaaagaagaa
gaaaaagaagaggcaaagattcctaaatcagattcactggacagcatgaccaaggctcgt
ttccggttctctgtggatggaaacatgctgagctatgacatgaaatgttcacccacgcat
cagtcctttctgagctttcgtggaccactactctcatctagacgaaacagcaagaccagc
cttttcagtttccaaagccaagcacacgatgcgagctcagaaaatgagtttgcagacgat
gaaaacagcatttttgaagacaacctaagtcagaggggatccctttttcatgcccagaag
tgtgatcaacggagcagcagcatgagccactgcagcttcttaccgcatctccgatttcag
ccaaataacatcaggcacagctctgtagactgcaatggggttgtgtctctggtggatggg
aattcacacccatcatcaccccctatggggcttctcctgcctaaagtgacactagatatg
gcctccactggagacaatgctgacacaactgatacagaatataggcgctccagtgaagga
aactatggagaatttctggatttactcgagggtcccgagttcagacagagagcacaaagt
atcgctagtgtcattacaagcaccatagaggagcttgaagagtcaagacagaagtgtcct
ccttgttggtacaaattcgctaacaccttcctcatctgggagttttgtccaatgtggttg
aaaatcaagaacagggtaaaattaattgtgttggacccatttatggacctaggtattacc
atttgcattatactgaacacactatttatggccatggagtatcatccaatgaagccgtgg
ttccaaaaaatgttgactgtgggcaatctggtatttactggcatcttcacaactgaaatg
gtcttgaagatcattgcattggacccatacttttactttcaagtgggatggaatattttt
gatgcagtcattgtctgcttaagcttgatagagcttggtctgagcaatgtgaagggcatg
tctattttgagatcattcaggctgctgagagtattcaagttggcaaaatcttggcccact
cttaacaaactcatcaaaataattggtaattcagtgggtgctttgggcaacctaaccctg
gtgctggccattattgttttcatctttgctgttgtgggcatgcagctgtttggaaaacaa
tacaaggactgtgtgtgtaagatctctgaggactgtgttctgcctcgatggcacatggct
gacttcttccattcattcctcattgtgttccgagtgctttgtggagagtggatagagacc
atgtgggactgtatgcaggtggctggcgtccacacatgcctcattctctacatgatgatc
atggttattggaaatcttgtggtgctgaacctgttcctggccctgctgttaagttcattc
agtgcggacaatctggcggctgtagatgatgacagtgagatgaacaatttacagattgcg
attggacggattcgcagaagcaatgcctacatcaagtcgctgcttcgaagctgctgcaac
agtttatgtctcagggataaaaagaaaaaaaagatcgaggaccaatctctggatgagctc
cacaaaccttttgggcgaaatggtgtcccaagccatgcccttaaagacttctctagggat
ggcaatggggatgtgactggtgttgacaaagctggagacaagtatatagtcaacagcaag
agtgatgattccatgttgtctttcataaacaatccaagtctgactgtttctgttccaatt
gctgcggaagagtctgactttgaaatgctcaacactgaggacttcagcagcacatcaacc
aatataccggagtgccacgtggctatagatgacgatgggcagtccagctcctcagaaggt
agtacagtggttcctctagaagatgaagtatccaaccatgactctgattgtgaagtaaaa
aaggaaccaaaggactgctttactgcaggatgtgtgcaaaagtttaagtgttgtcaggtt
aatgtgaatgtgggcttttggaagttgtggtggacattcagaaaatcctgctatcgcata
gtggtgcacagctggtttgagagcttcatcatcctaatgattttgcttagcagcggagca
cttgcatttgaagatgtctaccttgaacagaggaagatcattaaagtaatgttggagtat
gctgacaaaattttcacctatatctttattctggagatgctactgaaatgggtggcattt
ggatttgccaagtattttagaaatgcttggtgctggttggacttcctcattgttggtgtg
tcactggtcagtcttgtggccaatgctttggaatattctgatcttggtgcaatcaagtct
ctaagaactctgcgagctctgaggccactaagagccctgtcaaggtttgaaggcatgagg
gtagttgtcaatgctttaatgggagccattccgtccatcttcaatgtgctgctggtttgt
ctcatcttctggctcatcttcagcatcatgggagtcaacttatttgctgggaagttctac
agttgtatgaacacaaccacagaaaaggctttggacatatcagtagtgaaaaacaggaat
gattgtataaagattacaaatattacagaggtaaacaacactgtacgctggaaaaatctc
agagtcaactatgacaatgttgccatgggctaccttgctcttctgcaagtggctacattt
aaaggatggatggatatcatgtatgctgctgtggactcaccagcatcgcaagacgaacaa
ccagaatatgaaagaaactttgtgatgtatgtgtattttgttgtttttatcatattgggt
gccttttttaccctcaatctcttcattggtgtcatcatagacaatttcaatcagcaaaag
aagaagtttggaggtcaagacattttcatgaccgaggaacagaagaaatactacaatgca
atgaaaaagttggggtcaaaaaaaccatcaaaacctattcctaggccactgaatgaagta
caaggacatatctttgacttagtcacaaaacaagcatttgatgtagtgattatggttcta
atctggcttaatatggtaaccatgatggtggaaacagaggacgacaacgagtacaaaaaa
gaagttctcaagaatatcaacattgtgtttattgctgtcttcactggagaatgcttgtta
aagatggttgcacttcgacagtactttttcatgaatgggtggaatatatttgatttcata
gtagtcatcctgtcaattgttggcacgtgtctcgcagatttggtagagaagtactttgtg
tcaccgaccctgttcagagtcattcgattggctcgaatcggccgggtcctccgccttgtt
aaaagtgccaaaggaatccgcacactcttgtttgctttgatgatgtcacttcctgccttg
ttcaacattggtctcttgctcttcttagtgatgtttatctatgccatctttggcatgtca
aactttgcttatgtcaagagagaaaagggaatcgatgaccttttcaattttgagactttt
ggcaacagcatgatctgtttgtttcagattaccacctcagcggggtgggacggcctttta
gctcccatgctgaacacagatgatgattgcaataaagaaatggagcatccagggactggt
ggtaaaggagattgtggaaaggtgggagtaggtataggcttctttgtgagttacatcatt
atttgctttcttattgtggtgaacatgtacattgcagtcattctggagaactttggtgtg
gcaactgaggagagcactgacccattaagtgaagatgactttgaaatgttctatgaagtc
tgggaaagatttgatcctcatgcaacacagtttgtcaagtacaatctgctttcagaattt
gcagatgctctcaacccaccattacgcatccccaggcctaacagaaagacactcctgtct
atggatttaccaattgtgagtggtgaccgcattcactgcctagatatcctgtttgccttc
acaaaacgggttttgggtgagagtgcagagatggacaatctgagaggacagatggaggag
cgcttcatggcctcaaatccttccaaactgtcctatgaacccattaccactaccctccgt
cgcaagcaggaagatttatcagctgttgtgattcagaaagcatacagacattttgtgcgt
aggaataagctctctaacgtattaaatcttgacattcaaaatgatgaagaggtctctgac
gaagaagacaatctgacagaacccccccaaaaaatttcaagtgctgataaaactgaaccg
acagcttcgacagcctcttcgtcttcgtgcgacagtcagagtgtgacaacaaatgggaaa
aacaaatatgataaagacagaagtgagaaggaggttgagagcaaagatatcaaagaacaa
gatactcagaaaaacactcagaatattggagatgaagaaaaaactttaaaggaatga
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