Kryptolebias marmoratus (mangrove rivulus): 108240882
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Entry
108240882 CDS
T05608
Symbol
vps50
Name
(RefSeq) syndetin isoform X1
KO
K23288
syndetin
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
kmr04131
]
108240882 (vps50)
Membrane trafficking [BR:
kmr04131
]
Protein recycling
Others
EARP complex
108240882 (vps50)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps54_N
Syndetin_C
Motif
Other DBs
NCBI-GeneID:
108240882
NCBI-ProteinID:
XP_017280171
UniProt:
A0A3Q2ZCD9
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Position
LG5:12785473..12889332
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AA seq
992 aa
AA seq
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MQKIKSLMARQGLKSPQESMSDLSPVENLRIPSKEELRELRQQPIDPQAEQEIINSIEEV
YFSSDSFDMVRHELEKLPPELNLQELEEHRDKLKRQQAAVSKKVADLILEKQPAYVKELE
RVTALQTNLQLAAVICTNARRQLRGAKEGFTEASLGLLANQRRRQLLTGLLKSLRTIKTL
QRTDVRLSEMLEEEDYPGAIQLCLECQKAASTFKHYSCISELNSKLQDTLEQIEEQLDVA
LSKTCKHFDILHYTKVQRAYSLLGKTQTAMDQLHMHFTQAIHNTVFQVVLGYVELCAGNA
DTKFQKMQYKDLCTHITLDSYIPCLTDLCKALWEVMLSYYRTMQWHEEHDKQEAAPTPDD
AAAGSDELSVDRSYVKKKLEHGLTRIWQDVQLKVKAYILGTDMSNFKYDDFIVVLDVISR
LMQVGEEFCGSKSEVLQESIKRQSVNYFKNYHRARLEELRMFLENETWELCPVKSNFNIA
QLHEFKFMGQCRSPSISPSRQSVSSSVPPQEELSLFQLHLQDGNPFEMHIDHKEEETEDV
LASNGYESDEMEKSVYQDYDSDSDVPDELKQDYVDEQTGDAPLKSVSKETMRSKKKSDYN
LSKVNAPILTNTTLNVIRLVGKYMQMMNILKPIAFDVIHCVSQLFDYYLYAVYTFFGRND
MPVPSPSLPTYGGREAATTRVVGPACLYESSGLGLISSRLRTTLNRIQENLIDMDPVGEN
AGVHGPAEDRKEKVPSPHLSQLVVLTNSGTLYGLAQRVVATESLVFLAEQFESLQSHLDT
MMPAAKKPFLQQFYSQTVSTASELRKPIYWIVAAKAIDYEQMLLLMAGVKWDIKEIMSQH
NIYVDILLKEFEQFNKRLSDVSRHVRIPLPVSNVLWEHCIRLANRTLVEGYSNVKKCSNE
GRALMQLDFQQFLMKLEKLTDLRPIPDKEFVETYIKAYYLTENDMEQFIKNHREYSMKQL
ANLVNVCLGSHINKKARQKLLAAIDDIDRPKR
NT seq
2979 nt
NT seq
+upstream
nt +downstream
nt
atgcagaagataaagtctctcatggcccgtcagggcctgaaaagtccccaggaaagcatg
tcggacctgagtcccgtggagaacctgaggatccccagcaaggaggagttgcgggagctg
aggcagcagcccatcgacccccaggcggagcaggagatcatcaacagcatcgaggaggtc
tacttctccagcgactccttcgacatggtgcgacacgagctggagaagctcccgcctgag
ctgaacctgcaggagctggaggagcacagagacaagctcaagagacaacaggctgcagtt
tccaaaaaggtcgctgatctcattctggagaaacagcctgcttatgtcaaggagctggag
agagtgacggccttacagaccaacctgcagctggcagcagtcatttgcactaatgcaagg
agacaactacgaggtgcaaaggaggggttcacagaggccagcctgggtctgttagccaat
cagaggcgacggcagctgctgacaggtctgctcaagtctctgaggaccatcaagaccttg
caaagaacagacgtaagactcagcgagatgctcgaggaggaagactatccaggtgcaatc
cagctctgtctggaatgccagaaggctgccagcacgttcaaacactacagctgcatcagt
gaactgaactctaaactacaagacactcttgagcagatagaggaacagcttgatgtcgcc
ctgtcaaagacttgtaagcactttgatattttgcactacaccaaggtccagcgggcctac
tcgctcctcggcaaaacacagactgctatggatcagctgcacatgcacttcacccaggcc
atccacaacacggtgttccaagtcgtgctgggatatgtcgagctgtgcgccgggaatgcc
gacaccaagttccagaagatgcagtataaagacctctgcacgcatatcaccctcgacagc
tacattccctgcctgacggatctctgcaaggctttgtgggaggtgatgctgagctattac
cgcaccatgcagtggcacgaggagcatgacaaacaggaggccgctcccactcccgacgat
gcagcagcagggtctgatgagttgagtgtggaccgaagctatgtgaagaaaaagcttgag
catggactcacgcggatctggcaggatgtccagttaaaagtgaaggcgtacattctgggt
acggacatgtcgaacttcaaatacgatgatttcattgtggtactggatgtcatcagcagg
ctgatgcaggttggtgaggagttctgtggcagcaagtcagaagtcctgcaggagtccatc
aaacgccagagtgttaactactttaaaaactaccacagggcacgactggaagagctgagg
atgtttctggaaaatgagacgtgggaactgtgtccagtcaagtctaactttaatattgcc
cagctccatgagttcaagttcatgggccagtgtcgctctccgtccatttccccgagcaga
cagtccgtctcctcatccgtcccgccccaggaggagttgtccctgtttcagctgcacctt
caggatggcaacccatttgagatgcacattgatcacaaggaggaggagacggaggatgtg
ctcgcatctaacgggtatgaatcagatgagatggagaagagtgtgtaccaggactacgac
agtgacagtgacgtccccgatgaactaaagcaagactacgtagatgagcagacgggtgac
gcccctctaaagagcgtgtccaaagagaccatgagaagcaagaagaagtcggactacaac
cttagtaaggtcaacgcaccgattctcaccaacaccaccctcaacgtcattcggctggtc
ggaaagtacatgcagatgatgaacatcctgaagccaattgcctttgatgtcatccactgt
gtatcacagctcttcgactattacctttacgccgtctacaccttctttggacgaaatgac
atgcctgtcccaagcccatctttgcccacttacggtggcagagaggcagccactaccagg
gtggtgggccctgcctgcttgtatgagtcatcgggtctgggccttatcagcagcagactg
agaaccacactgaaccgcatccaggagaacctcatcgacatggatcctgtaggggagaac
gcaggagtccatggcccggcggaggacaggaaggagaaggtgcccagtcctcatctcagc
cagctggtggtcctcaccaacagtgggactctgtacgggctggcccagagggtggtggcc
accgagtctcttgtgtttttggccgagcagttcgagtccctgcagtcccacttggacacc
atgatgcctgcagccaagaaacctttcctacaacagttttactcccagacggtgtctaca
gccagtgagctgcggaaaccgatatactggattgttgcagccaaggccatcgactacgag
cagatgctgctcctgatggccggagtgaaatgggacatcaaggagatcatgtcgcagcac
aacatatatgtggacatcctgttgaaggagtttgagcaattcaacaagcggctgagtgat
gtttccagacatgtgcgcattcctctgcccgtgtccaacgtcctctgggagcactgcatc
cgcttggccaacaggactcttgttgagggctactccaacgtgaagaaatgtagcaacgag
ggccgggccttgatgcagctggactttcagcagttcctgatgaagctggagaagctgacg
gacctgcgaccgatccccgacaaggagtttgtcgagacctacatcaaggcttactacctg
acggagaatgacatggagcagtttatcaagaatcacagggagtactccatgaagcagctg
gccaacctggtaaacgtttgtctgggctcgcatataaacaagaaggctcgtcagaaactt
ctagcagccatcgacgacatcgacagacccaagagatag
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