Kryptolebias marmoratus (mangrove rivulus): 108240989
Help
Entry
108240989 CDS
T05608
Symbol
palb2
Name
(RefSeq) partner and localizer of BRCA2
KO
K10897
partner and localizer of BRCA2
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr03440
Homologous recombination
kmr03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
108240989 (palb2)
03460 Fanconi anemia pathway
108240989 (palb2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kmr03400
]
108240989 (palb2)
DNA repair and recombination proteins [BR:
kmr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
108240989 (palb2)
FA (Fanconi anemia) pathway
Downstream FA components
108240989 (palb2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PALB2_WD40
Motif
Other DBs
NCBI-GeneID:
108240989
NCBI-ProteinID:
XP_017280375
UniProt:
A0A3Q3A700
LinkDB
All DBs
Position
LG3:17635585..17643630
Genome browser
AA seq
1335 aa
AA seq
DB search
MDINVQHSEEQLRNTLHCDDKEKLRRKLAQLQREYLKTAQRLQRAERLEAVQRHVRSRIS
QQKHQELEATSSSSSSIQNANNAVAQGLPPRQAHTEGPADSDTSRRNQVIRFMLPPDAAC
PQTADPGNDAAVGYRASPTLRLRSRRSRLRLERRSAEAGNDADSNQQGQQQEGKVESAKT
VVEEEGTVEAKGGDEANGSEELFSATESPSLLLTHCNTQGHTETGDVLGKENLRGQEQQA
KEADLTTEERGENGTQNEETNAKTEEDGARSEEVEEKKAHMENGEKNVPEKTCENLVKIK
EEENGITREGKAASLLDSCTLVEGLLFPAEYYVRTTRRMTFSQSQPDMQAVILSQLSMGR
HRRSQGRGRGSNRDSQTRGSSDQHTQTDFSSPTTPSSFLNPLNSPQARPADTAVECSQSS
GDTSNPVTAHQMDTPPVTVTRPPRGKRRRRRGRGRGRPQTSRAPQPPVSSVSSSQSVHEA
DGADTCLGPVKADSESGGTQPSSTHSSSSKVNGAAERVQKVFPIFQKSSITTSRQVNTGT
SNYQSLLLPSSSSPAQTSHLPPPPPLFPVPLVGSLKSLDTHQDFHLPDDQFASLKLHKLR
QVAVESGVEHFSAPSHNTRSSFRCADSPCSIGDLTTLLSLPLSVTPTVTDPACPDDEEQQ
TQLRDLPSAHILTDDLICKDSTQEVFENNNPETNVEQQLHAETQDSEDCGHPEHEAVTPD
SQSRSCISTRSTHRSTNSDKLNPQQSFLYKAPFKGNDSVTGHSDELKEQLVAKKQTDYCG
LSSSSEDQMTRYHQVENRAATETLLFDHSQDETQEKPSNVPASLQTCNKAKVAHESPVQN
KNVQCSFDEPELNPNLSEDRLTHCSQTVLKSPPASVNCSFRTTRPPSPAPAPSPALPSLG
ITPHPPLSSSPAAPSLSLPPPHSPSTQALSPPALSPHPSTPWLPPLSPCSHVQGSSEPPA
VSDRCHKVQLAASLNPSGGQLHGSPGPGLQTTEDTAEWCIMRRSHTLKAAAGGSLVDACC
LPGSSGGLFVAAAGKWAVCLWSQTSASDWSLKHTWTFREPVINVFPVPDAAGLICVTLGQ
LEIREVRTLSCRSLAETLICEGVMQVVVGLYESRVVTSSHSATGSTLQAFTLSDSSGSWS
CQPLVSPGVCVGALAPVDELSDALIGTSEDGHLFIWNSKTGQLLCSVLLGHGLSHTACLR
GYSQSGVLLVLLQHHFLNSLDDDDDDEAIIKDQMFSEEETKTALFSLVGINPLSGKSVLA
TRLCPPKGWSGRLCEADVRRSSVVGLSQSGRICVWELGKQTSRMVEAEDWQLVRWGGEDR
LVIGHHNGDVSLRCC
NT seq
4008 nt
NT seq
+upstream
nt +downstream
nt
atggatatcaatgttcagcacagtgaggagcagctgaggaatacactacactgtgatgac
aaggagaagctccgcaggaagttggcacagttacaaagggagtatctcaagacggctcag
agactgcagagggctgagcgtttggaagctgtgcagaggcatgtcagaagcaggatttcc
cagcagaaacatcaggagctggaggctacgtcgagctcttcctcgtcgatacagaacgca
aacaacgcagtggctcaaggtttacctccgcgtcaggcccacactgaaggtccagcagat
tctgatacatccaggaggaaccaggtgatcaggtttatgcttccccctgatgctgcttgt
ccacaaactgcagatcctggcaatgacgccgccgtaggttacagagccagtcccaccctg
cgccttcggtcacgacgcagccgccttcgcctggagaggaggagtgctgaggctggcaac
gacgcagacagcaaccagcaaggacagcagcaagagggaaaggtggaaagtgctaaaacg
gtagtagaagaagaaggaacagttgaggcaaagggaggagatgaagcgaatggaagtgaa
gagctgttttctgctacagagtccccctctctgctgctaacacactgcaacacacaagga
cacactgaaactggagatgtgttgggaaaggagaacctaagaggccaggagcaacaagca
aaagaagccgatttaaccactgaggagaggggggaaaatggcacgcaaaacgaggaaaca
aacgctaagactgaagaggatggagccaggagtgaggaagtggaagagaaaaaggcacat
atggaaaatggtgagaaaaatgtacctgaaaaaacttgtgaaaatttggtgaagataaaa
gaagaagagaatgggatcacgagagagggaaaagctgcaagcctcctggattcctgtaca
ctcgtggagggacttcttttcccagcagaatactacgttcgaaccacgagacggatgacg
ttttcacagagtcagcccgacatgcaggccgtcatactgtcccagctgagcatggggcgg
catcgcaggagtcaaggccgcggcagagggtcaaaccgggactcccagacccggggcagt
tctgatcagcacactcagacagatttctcctctccgacgactccttcctcgtttttaaac
cctctcaactcgccccaagcgcgtcccgccgacaccgctgtggagtgtagccagagctcc
ggtgacacttcgaatcccgtcacggctcaccagatggacacaccgccagtcaccgtgact
cgtcctccgagaggaaagaggaggaggaggagaggtagaggcagggggagacctcagaca
tcaagagctccacaaccccccgtctcctcagtgtcttcctcccagtctgtccatgaagct
gacggagcagacacctgcctcggtccagtgaaagctgactcagagtcaggtggaacccag
ccttcatccacccacagctcttcatctaaagttaatggagctgctgaacgtgtgcagaaa
gtctttcctatctttcagaagagcagcatcacaaccagcagacaggtgaacacaggcacg
tcaaactaccaatctctcctcctgccctcctcatcttcaccggcacaaacatctcatctt
cctcctcctcctcccctgtttcccgtcccgcttgtcggcagcctgaaaagcttagacacc
caccaggattttcacctcccggacgatcagtttgcctccctgaagctgcacaaacttcgg
caggttgccgtggaatcaggggtcgaacatttctccgcaccgtcacacaacacgcgcagc
agcttccgctgcgccgactcgccgtgcagcatcggcgatctgacgacgcttctttccctc
ccgctcagcgtcacaccgacagttacagacccggcctgccccgatgacgaggaacagcaa
acccagctgcgggacttgccatcagcacacatccttacagatgacttgatttgcaaagac
tcaactcaggaggtgtttgaaaataataacccagaaactaacgtggagcagcagctccat
gcagagacacaagactctgaggactgtggacatccagagcatgaagctgtgactcccgac
agtcaaagcaggagctgcatatcaaccagaagcacacacagatccacaaactctgacaaa
ctcaatcctcagcagagctttttgtacaaagcaccattcaaagggaatgattctgtcact
ggacattcagatgaacttaaagagcagctagttgctaaaaaacaaacagattattgtgga
ttaagcagctcttcagaagatcagatgactagatatcaccaagtagaaaacagagctgct
acggagactcttttatttgatcactcccaagatgaaactcaagagaagccttcgaacgtc
cccgcttcgttacaaacatgtaataaggcaaaagtcgcacacgagtcgcctgttcagaac
aaaaacgtgcaatgttcttttgacgaacctgaactcaacccaaacctttccgaagacaga
ctgactcattgctctcagactgtgttgaaatctcctcctgcttcagtgaactgctccttt
aggaccacccgcccaccctcacctgctccagctcccagcccggcgctgccctccttggga
atcactcctcatcctcctctgtcttcctcccccgccgctccatccctcagcctccctcct
ccccacagtccgtccacgcaggctctgtctcctccggctctttctcctcacccatccacc
ccctggctgcctccgctctccccatgcagtcacgttcagggttcctccgagccgccagct
gtgagcgatcggtgtcacaaagtccaactggctgcaagtctaaatccatccggtggtcag
ctccacggctcccccggacctgggcttcagacaacagaggacactgcagagtggtgcatt
atgagacgtagtcacacgctgaaggctgcagcaggaggctctctggtggacgcgtgctgt
cttcctggatcatcaggtggactgtttgtagcagcagcaggaaaatgggccgtgtgcctc
tggagtcagacttcagcttctgactggagcctaaaacacacctggaccttcagagagcct
gtcatcaatgtgtttcctgtcccagacgccgctggcctcatctgtgtgactcttggtcag
ctggaaatcagagaagtgagaacgctgtcgtgccgcagcctcgccgagacgctgatatgt
gagggggtcatgcaggtcgttgtaggtttgtacgagtcccgggtggtcacctcgtcccac
tcagcgacaggctctaccctgcaggcgttcacgctgtcagacagcagcggctcctggagt
tgtcagcctctcgtgtctcctggcgtttgtgtcggcgccctcgctcccgtggacgagctc
tctgacgctctgattggtacaagtgaagatggacacctcttcatctggaattcaaaaacc
ggacagctgctgtgcagcgtcctgctaggccacggtttatcacacacagcctgcctcaga
ggatactcccagtctggagtgttgttggtcctgctgcagcaccactttctaaactccctg
gatgatgatgatgatgatgaggcaataatcaaagatcagatgttttcagaggaggagaca
aaaacagccttgttctctttggtcggcatcaaccctctgagtggaaaatccgtcctggct
actcgactctgtccacccaaaggctggtctggcaggctgtgtgaagccgacgtccgtcgc
tccagcgtggtgggcctgagccagagcggccgcatttgcgtgtgggagctcggaaagcaa
acgtccaggatggtggaggctgaagactggcagctggttcgatggggaggagaggacagg
ctggtgatcggacatcataatggagatgtttctttacgctgctgctaa
DBGET
integrated database retrieval system
