Kryptolebias marmoratus (mangrove rivulus): 108241434
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Entry
108241434 CDS
T05608
Symbol
slx4
Name
(RefSeq) structure-specific endonuclease subunit SLX4
KO
K10484
structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
108241434 (slx4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
kmr04121
]
108241434 (slx4)
03400 DNA repair and recombination proteins [BR:
kmr03400
]
108241434 (slx4)
Ubiquitin system [BR:
kmr04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
108241434 (slx4)
DNA repair and recombination proteins [BR:
kmr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
108241434 (slx4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BTB
Slx4
zf-met
zf-C2H2_jaz
zf-C2H2
zf-C2H2_4
Motif
Other DBs
NCBI-GeneID:
108241434
NCBI-ProteinID:
XP_017281064
UniProt:
A0A3Q3GTQ4
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All DBs
Position
LG3:complement(22114397..22125904)
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AA seq
1695 aa
AA seq
DB search
MDDSDQDFVDICSKLLKRVRKKKGEQQVLSQATQGDKRMRSNPQGGDSGWRLAATQPVGA
EAEQDVVCGGARFDPGESSDRVAQTDRGLRAKDKVLLKIQHFRRASPQKMAHNDNIQPTK
QDACALTAQRQIQDPPVSLGSARHTESDEALALRLQQQLDREAAGAQTVDLEDGGLFFCQ
ICHRDLSHMAPEGRTQHLNRCLDKSEESDPAALPAAPPASAVPDCPICGKKFKSQKSRST
HLKRCSADMGVPPAMLLQALQRQAQESPSAATANTLLQSGVKKRKGPPRPGVPARKKPRT
KAEPLDEETMVALALSCSMAEKEKERQKEKEAEKHLQNECVPSHSSMNPALRWRPDAAKG
HGRKKKGAVPRPPPLLLVQDAETALARLQDRVSALLLCRRAPSPPTPTLRPSSLPSWTGA
VLLWQKSALLDGDSTCSSDFYAAELKPFFTSLEPVKADAAPSTTGNEPESVRPVSEETPV
SGPSASVRPSCSQMASCSSGPSTPGAAQLPVGSQTLRDLMELAEDGMTLTQYGYAAKEIH
LSGFIQDDEAEPISGFLPETTHKPSDDPHRPGERTTVQPGADTERNSHGSVALSRLVSDL
TSMVNNPQLSDVQLQVDSGEVYFAHSFMMYARCPLLAEMVHESGIGVKEEGTPAAQRVLL
SDVPGQAVFALLQYLYTARCSVPAPLLPHMLELASRFDLQNLEQLCHLQQETAEDVGGEV
LDVNQEEHANNQTDQAFMELLRSMWNGEDEDATDSDSGGGGGGGGGGGMEEAHRPDEVAS
GDRELREEQVNQEELEEIYEFAATQRKKKERDSEEEEEDKKMDEEQSGEEVFTKLTEPKE
GLGDKKLHPKIPSESDAGLDCSYSRLFSQPWGVYEEGDHSLISNTPKTHPLPSKQHRSPH
KASSVLQSSESLVVDLAVSPPLVTPSLPVPGESPGQGSDQEDGGAKRKEATGPDVPTTRE
SRVTRSICTPPPDSPPKKEEPELIVLSDSSEDMEVGPAVLSPCRLSAPSSSPQNLQSYTD
IKSRQDPTPSEKKESGGSTGHESKLLDCSPEISWLIPSTPLQSDRSTRSSSTQTKSSICR
TQLFPKEDSSPPSASVFSSPALTLSNKRRNSHEPSRATESNVPGLKPNRSPLRSLDREAS
LKKSCDVSKNGDVFLVKSSPPKLPRFSSSTHYSLQTFSKPDTPQRHQQPYSSTPLHTELH
QPPIPPPASPLQADADKRKSPSRRGESVSSGSMEKSGLGSLHLSPSESPSSSSYSGCQSN
RQRTSSSQSRRSAESSSNDRMGARNEREENQMGRSNEEANGGTGEADAGEPSFQQSFVDE
PPIAFNDSWGLDAYAETNPGCFSLRLEDSGGSNLQENSSRRQVTTRSSSASTSNPTPGDR
VEGNANRGGAPASPPPQQPSPPEPNARPTPEIDSGLLDSKLWDSWEEDEGEENLPLSQRV
TALPKTPALQSKKRRSVVPITPTPHYSDMDTPELRTKLSRFGVRPLPKRQMVLKLKEIHQ
YTHQLVSSDSEDEAPQAKPPPRRLVSRAQTAEFKEPRAPAVVSPVKNDQGEEANSLSASQ
GSNTSSTATSDESERSNPEQVLSSDGDSDSDGGVSSSQAASRLQDRLQAVRSFILSDSRL
YSQILQYQPVVLSQFQAQLKAAGICLGAARLVDYLDSQCITFTTAKPGHSAPGRGRRGRK
AGKGATGKKNAAAKL
NT seq
5088 nt
NT seq
+upstream
nt +downstream
nt
atggacgactcggaccaggattttgtggacatctgctccaaactgctgaagcgtgtccgt
aagaagaagggtgagcagcaggttctgagtcaagcaacccaaggagacaagaggatgagg
agcaatccacagggtggagactctgggtggaggttggcagctacccagcctgtcggtgct
gaagctgagcaggatgtggtttgtggaggggctcgatttgacccaggagagtcctcagat
cgtgtagcgcaaactgacagaggcctgagggcaaaagacaaagtgcttcttaagatccaa
catttcaggagagccagtcctcagaagatggcgcacaacgacaatatccagccaacaaag
caggacgcctgtgctctgactgctcagcgtcaaatacaagatcctccagtgtctctcggc
tctgctcgccacacggagagcgatgaggctctggcccttcggctgcagcagcagctggac
agggaagcagcaggagcccagacggtagacttggaggatggaggcctcttcttctgtcag
atctgtcacagagacttatcacacatggcgcctgagggacgcacacaacacctcaacagg
tgtttagataagagtgaagagagtgacccagctgcacttccagccgcgcctccagcctct
gctgtccccgactgccccatctgtggcaagaagttcaagtcccagaagagccgctcgacc
cacctgaagcgctgctccgcggacatgggtgtccccccggcaatgctgctgcaggctctg
cagagacaggctcaggagagtccgagtgctgccactgctaacactctcttacagtccgga
gttaaaaaaagaaaaggtccacctcggccaggcgttccagccaggaagaaacccagaact
aaggccgagccgctggatgaagagaccatggtggctctggctctgtcctgctccatggcg
gaaaaggagaaggagcggcagaaagaaaaggaggcagagaaacatttacagaatgagtgt
gttccttctcacagctccatgaatccagcactgaggtggaggcctgatgcagctaagggg
cacggaaggaagaagaagggcgctgtccctcgtcctcctccgctcctcctcgttcaggat
gctgagacggccctggctcggctgcaggacagagtttctgctcttctcctttgccgccga
gccccctctccgcccacccccacgctgcgccccagctctctgcccagctggacgggtgct
gtcctcctctggcagaaaagtgcactgctggatggagactccacctgttcgtctgatttc
tatgctgcagagctcaaacccttcttcacatctttggaacctgttaaggctgatgcagcc
ccgtccaccaccggcaacgagcctgaatctgttcggcctgtgagtgaagagactccagtt
tcagggccgagcgcctccgtccggccatcctgctcccagatggcctcctgctcctcaggt
ccctccaccccgggggcagcgcagctcccggtgggcagccagaccctcagagacctgatg
gagttggccgaagacggcatgactctgacgcaatatggatacgccgctaaggaaattcat
ctgagtggtttcatccaggacgatgaggctgaacccatcagcggtttcctgccggagacg
acccacaaaccctcagatgacccccacagaccgggagagaggacgaccgttcagccagga
gcagacacggaaagaaacagccacggatcagtggcgctgtccaggcttgtctcagacttg
accagcatggtgaacaaccctcagctcagtgatgtgcagcttcaggtggacagtggagag
gtctactttgcccattccttcatgatgtacgctcgctgccccctgctggcagaaatggtg
cacgaaagtgggattggtgtgaaggaggagggcacgcccgcagctcagagggtgttactg
agtgacgtgccgggccaggcggtgttcgctctgctgcagtatctctacaccgcccgctgc
tccgtcccagcaccactgctgcctcacatgctggagctggcatccaggtttgacttgcag
aacttggagcagctttgtcatctccagcaggaaacggcagaagatgtgggcggtgaggtt
ctcgacgtgaaccaggaggaacatgccaacaaccagacagaccaggcgttcatggagctc
ctccgatctatgtggaatggagaggatgaagatgcgacagactcagacagcggcggcgga
ggaggaggaggaggaggaggaggaatggaggaggcccaccgacctgacgaggtggcctca
ggtgacagagagctacgggaggaacaggtgaatcaagaagagctggaggaaatctatgag
ttcgctgccacacagaggaagaagaaggagcgagacagtgaggaggaagaggaagacaag
aagatggatgaggaacaaagcggagaagaagtgtttaccaaactgactgaacccaaagaa
gggcttggggacaaaaaattgcatcccaaaattccctctgaatccgacgctggcttggat
tgtagctacagccgcctcttttcacagccatggggggtctacgaggaaggagatcattcc
ttaatatctaacacacctaaaacacaccctttaccatccaaacaacacaggtctccccac
aaagcatcatctgtacttcaatcttcagaaagtttagtagttgacctcgcagtcagccct
ccgctcgttacgcccagcctgcctgtcccaggagagtctcctggtcaaggaagtgaccag
gaggacggtggagccaagaggaaagaggccactggaccggacgtgcctacaacgcgagaa
agccgagtcactcgtagtatttgcacccctcctcccgattcacctccaaagaaggaggag
cctgagctcatagttctgtctgactcgagcgaggacatggaggtgggtcctgctgttctc
agcccctgcaggctttcggctccttcttcctccccacagaacctgcaaagctacacggac
atcaaatccaggcaggacccaacacccagtgagaagaaggagtcgggtggatcaacggga
catgagtccaaattactggactgttctccggagatttcctggctgatcccctccacccct
cttcagtccgacagaagcacacggtccagctccactcagaccaaaagcagcatctgcagg
acgcaacttttcccgaaagaggattcttccccgccctcggcttcggttttctcttctcct
gctttaactttgagtaacaagcgtcgcaactcacacgaaccgtctcgtgcaaccgagagc
aacgtccctgggctaaaaccaaacagatcacctctcaggagcttggatcgagaagcttct
ctcaaaaaaagctgcgatgtgagtaagaatggagacgtctttttggttaaatcgtcaccg
cctaagctgccgcgcttctcaagctcgacacattattccctccaaactttctcaaaacct
gacactcctcagcggcaccagcagccgtacagcagcacgcctttgcatacagagctccac
cagccccccatccctcctcctgcctcccccctccaggctgacgcagataaacggaagtcg
ccaagtcgacggggtgagagcgtgtcttcaggaagcatggagaagtcggggttaggaagc
cttcacctctccccttcagaatcaccctcttcctcctcctacagcggctgtcagtcaaac
agacagaggacgtcttccagccagagccgtcgctctgcggagtccagcagcaacgacagg
atgggagcaagaaatgagcgagaggaaaaccaaatgggccgcagtaacgaagaggcaaac
ggaggcacaggagaggcagatgctggagaacccagttttcagcaaagcttcgtggacgaa
ccccccatagctttcaacgattcatggggcctcgatgcctacgcagagaccaacccgggc
tgcttcagcctgaggctcgaggacagcggaggatcgaatctgcaggagaacagctcgagg
cgacaagtaacaaccaggtcgtcctctgcgtccacctccaacccgacgcctggtgacagg
gtggagggaaacgccaaccgaggaggtgcacctgcctctcctccacctcagcaaccctca
ccacctgaacccaatgcacggcccacaccagagatcgacagcggcctcctggactccaaa
ttatgggacagctgggaggaagacgaaggcgaggagaaccttcctctctctcagagggtg
actgcgctgcccaaaactccagcgttgcagagtaagaagcgtcgctccgtggtgcccatc
acgcccacgcctcactactctgacatggacacgcccgagctcaggaccaagctcagcagg
tttggggttcggcctttaccgaagcgtcagatggtcctcaagctgaaggagatccaccag
tacacccaccagctggtcagctccgactccgaggatgaagccccgcaggcgaagcccccc
cccagacgtctcgtttcccgcgcccagacggcagagtttaaggagccccgagctcctgct
gtcgtgtcccccgtcaaaaacgatcaaggggaggaggctaattcgctgtcagcctcgcag
ggatcgaacacctcctcaacagccaccagcgacgaatctgagaggtccaacccagagcag
gttctctcctctgatggggactcagacagtgacggcggcgtctcgtcctcgcaggccgcg
tcgcgcctccaggatcggctgcaggcggtgcgctccttcatcctgtccgactccaggctg
tacagtcagatcctccagtaccagcccgtcgtcctgtctcagttccaggcgcagctcaag
gcggcggggatctgcctgggcgccgcccggctggtggactacctggactctcagtgcatc
accttcaccacagccaagccgggccactctgcacccggcagaggccggcggggcaggaag
gcgggcaagggcgccacgggcaagaaaaacgctgctgcgaaactttaa
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integrated database retrieval system
