Kryptolebias marmoratus (mangrove rivulus): 108242236
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Entry
108242236 CDS
T05608
Symbol
pdzrn3b
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3-B isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
kmr04121
]
108242236 (pdzrn3b)
Enzymes [BR:
kmr01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108242236 (pdzrn3b)
Ubiquitin system [BR:
kmr04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
108242236 (pdzrn3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
zf-C3HC4_4
zf-RING_5
Prok-RING_4
PDZ_Tricorn
Sina_ZnF
zf-TRAF
zf-rbx1
U-box
zf-RING_6
RING_XB3-XBAT31
IBR_1
Motif
Other DBs
NCBI-GeneID:
108242236
NCBI-ProteinID:
XP_017282460
UniProt:
A0A3Q2ZSA3
LinkDB
All DBs
Position
LG4:complement(24532081..24650304)
Genome browser
AA seq
1051 aa
AA seq
DB search
MGFELDRFKGTVDPDFKCNLCNKVLEDPLTTPCGHVFCSGCVLPWVVQQSSCPVKCQRIS
AKELNHVLPLKNLILKLEIKCDNHARGCDAVVRLQHLAEHAEACGFSPAKCGNRGCDAVL
SARDVDAHMREACEHRAAGLCEDGCGLPLTHREQRLKSHCCVRALKAHSGALQCKLLILD
REFKKQALEANKREKALLAQLSSVHSELQMTALKYQKKFTEYSERIDSLTQTVASSCQED
RTKNVTLVLLREGGSLGFNIVGGRPCVDDNDSTSNEGIFVSKIVEKGPADKEGGLQIHDR
ITEVNGKDLSKATHEQAVEAFRTAKEPIMVQVLRRAPYPKLVSPTADLQVSDIGTQTDIA
LQHITALSKLPSSSPPMTELEEYLLPDEHPPGHAYFDPNDFLEGIQQDIEREGLEYEEVD
LYRANIQDKLGLTICYRTDDEDEAGIYISEIDPNSIAAKDGRIREGDKIVQINGVEIQNR
EDAVALLTTEGNQNISLLVARPEIQLDDSWMDDDRNDFLDDLHMDMLEQQHHQAMQFTAS
MLVQKKHEEDGGTTDTATLLSNHHEKDSGVGRTDESTRNDESSEQENLADDQTTTASNTL
GSCRKLTYSQDTLGSTDLPFGGESFMSADYTDADFLGIPADECERFRELLELKCQMRTSG
AQALYGQGAGAEGQAEEGVDKELELLNEELRSIELECLNIVRAHKMQQLREQCRESWMLH
NSGFRNYNTSIDARRHELSDISELPEKSDKDSSSAYNTGESCRSTPLTLELSPDNSLRRG
AENQCPAGPSGSSSSVGKMLKPLLSPVQEACGPSRSRGSSKDQDGALQADSKERKLGESS
KSGRSFSQPHSPYKHAHIPAHAQHYQSYMQLIQQKSAVEYAQSQMSLVSMCRDPISPSDL
EPKMEWKVKIRSDGTRYITKRPVRDKLLRERALRIHEERSGMTTDDDAISELKMGRYWSK
EERKQHAVRAKEQKQRREFMKQSRADCLKEQSGTEDKKEPNIIELSHKKMMKKRNKKIFD
NWMTIQELLTHGTKSPDGTRVYNSLLSVTTV
NT seq
3156 nt
NT seq
+upstream
nt +downstream
nt
atgggattcgagttggaccgcttcaaggggaccgtggacccggacttcaaatgcaacttg
tgcaacaaagtcctggaggacccgctgacgactccgtgcggccacgtcttctgctccggc
tgcgtgctgccctgggtcgtccagcagagcagctgccctgtcaaatgccagcgcatctcc
gccaaggagctgaaccacgtcctgccgctgaagaacctcatcctgaagctggagatcaaa
tgtgacaaccacgcgcggggctgcgacgccgtggtgaggctgcagcacctggccgagcac
gccgaggcgtgcggcttctccccggccaagtgcggcaacaggggctgcgacgcggtgctg
agcgcgcgggacgtggacgctcacatgcgcgaggcgtgcgagcaccgggcggcggggctc
tgcgaggacggctgcgggctgccgctcacgcaccgggagcagaggttaaagagccactgc
tgcgtgcgagccctgaaggcgcacagcggcgcgctgcagtgcaagctcctcatcctggac
cgggagttcaagaagcaggctctcgaagccaacaagcgggagaaggcgctcctggcccag
ctgtcctccgtgcacagcgagctgcagatgacagcgctgaagtaccagaagaaattcacc
gagtacagcgagaggatcgactccctgacccagaccgtggcttcctcctgccaggaagac
cggactaaaaacgtgacacttgtccttcttcgtgagggtggatctctgggttttaacatc
gtaggaggaaggccatgcgtggatgacaatgacagcacttcaaacgaagggatctttgta
tccaagattgttgagaaaggtccagcggacaaggagggtggccttcaaattcacgacaga
ataactgaggtcaatggcaaggatctctccaaggccacccacgaacaggcagtggaggcg
ttccgcaccgccaaggagcccatcatggtgcaagttctgcgccgggccccttaccccaaa
ctggtcagccccaccgcggacctccaggtgtcagacattggcacccagaccgacatcgct
ctccagcacatcacagccctcagcaagctgccttcctcctcgcccccaatgacggagctg
gaagagtacctgctgccggacgagcaccctcctgggcatgcatactttgaccccaacgat
ttccttgagggcatacaacaggacatagagcgtgaggggctggaatatgaggaagtggat
ctgtaccgagccaacatccaagataaacttggcctgaccatctgttacaggactgatgat
gaagatgaggctgggatttacattagtgagattgacccaaacagcatcgccgcaaaggac
ggcagaattagggaaggggacaaaatcgtacagataaatggcgttgagatccaaaaccgc
gaggatgccgtggcgctgctgaccactgagggcaaccagaatatctctttgttggtggcc
agaccagagatccagctggacgacagctggatggacgatgacaggaacgacttcctggat
gacctccacatggacatgctggagcagcagcaccatcaggccatgcagttcactgccagc
atgctagtgcagaagaagcatgaggaggatggcggcactacagacacagccaccctgctc
tccaaccaccatgaaaaggacagcggagtcggtcgcacggacgagagtactcgaaacgac
gagagttccgagcaagaaaacctcgccgatgatcagacgaccacagcctccaacacgctg
ggcagctgcagaaagctgacctacagccaggacactctcggcagcactgacctgcccttc
ggcggcgagtccttcatgtcggcagactacaccgacgcagactttctgggcatcccagct
gacgaatgcgaacgcttccgagaactgctggagctgaagtgtcagatgaggaccagcgga
gctcaggccctgtacggtcagggtgctggcgccgaagggcaggctgaggagggtgtggac
aaggagctggagttgctaaacgaggagctgcgcagcattgagctggagtgcctgaacatc
gtccgcgctcacaagatgcagcagttgagggagcagtgccgagagtcgtggatgctccac
aacagcggcttccgcaactacaacaccagcatcgacgctcggcgccatgagctgtccgat
atctccgagctgcctgagaaatctgataaggacagctccagtgcctacaacactggcgag
agctgccgcagcactcccctcactctagaattgtctccagataactccctccgtcgagga
gcagaaaaccagtgcccagctggaccctccggctccagcagctccgttggcaagatgctc
aagcccctcttatcccctgtccaggaggcctgtgggcccagcaggagcagaggctcctcc
aaggaccaagatggagcactgcaggcagatagcaaggaaaggaagctaggagagtccagt
aagagcggacgtagcttttcccagccccattcaccttacaagcacgctcacatcccggcc
cacgcccagcactaccagagctacatgcagctgatccagcagaaatcagccgtggagtac
gcccagagccagatgagtctggtcagcatgtgccgggaccccatcagccccagcgacctg
gagcccaagatggagtggaaggtgaagatccgcagcgacggcacgagatacatcacaaag
cggcctgttcgcgacaagctgctgagggagcgcgccctccggattcacgaggagcgtagt
ggcatgaccacggacgacgacgccatcagcgagctcaagatgggccgctactggagcaag
gaagagaggaagcagcacgccgtgcgcgccaaggagcagaagcagcgccgcgagttcatg
aagcagagccgagctgactgcctgaaagagcagagcggcaccgaggacaaaaaggagccg
aacatcattgaactcagccacaaaaaaatgatgaaaaagaggaacaagaaaatatttgac
aactggatgaccattcaggaactgctgacccatggcaccaagtcacctgacggcacaagg
gtttacaactctctgctgtctgtgaccacagtctga
DBGET
integrated database retrieval system
