Kryptolebias marmoratus (mangrove rivulus): 108242323
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Entry
108242323 CDS
T05608
Symbol
prpf19
Name
(RefSeq) pre-mRNA-processing factor 19
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr03040
Spliceosome
kmr04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108242323 (prpf19)
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
108242323 (prpf19)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
kmr03041
]
108242323 (prpf19)
04121 Ubiquitin system [BR:
kmr04121
]
108242323 (prpf19)
03400 DNA repair and recombination proteins [BR:
kmr03400
]
108242323 (prpf19)
Enzymes [BR:
kmr01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108242323 (prpf19)
Spliceosome [BR:
kmr03041
]
Complex B
Other components
Prp19 complex
108242323 (prpf19)
Complex C
Prp19-CDC5 complex
108242323 (prpf19)
Ubiquitin system [BR:
kmr04121
]
Ubiquitin ligases (E3)
U-box type E3
108242323 (prpf19)
DNA repair and recombination proteins [BR:
kmr03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
108242323 (prpf19)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Prp19
Beta-prop_EML_2
WDR55
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_WDR75_1st
Beta-prop_EML
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
Beta-prop_IFT140_1st
NBCH_WD40
Beta-prop_TEP1_C
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_HPS5
Beta-prop_WDR19_1st
PEP5_VPS11_N
Beta-prop_Vps41
WD40_RFWD3
Beta-prop_DCAF4
U-box
PROPPIN
Beta-prop_SPT8
Beta-prop_Nup120_160
Beta-prop_WDR35_TULP_N
Beta-prop_DCAF12
Cytochrom_D1
zf-Nse
RMC1_N
B-prop_COPA_B_2nd
DUF2518
Motif
Other DBs
NCBI-GeneID:
108242323
NCBI-ProteinID:
XP_017282593
UniProt:
A0A3Q3FLR8
LinkDB
All DBs
Position
LG9:16506532..16512321
Genome browser
AA seq
505 aa
AA seq
DB search
MSLVCAICNEVPEHPCISPVSNHVFERRLIEKYIAENGTDPMNGQPLSEEQLVDIKVTHP
IRPKAPSATSIPAILKSLQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARL
NKEVTAAREALATLKPQAGLVTPQAVPASQPAAAGAGGEPMEISEQVGMTPEIIQKLQDK
ATILTTERKKRGKTVPEELVRAEDLSKYRQMASHAGLHSASVPGILALDVCPSDTNKVLT
GGADKNVVVFDKSEEQIVVTLKGHAKKVTSVIFHPSQSMVFSASPDATIRVWSVTGGNCV
QVVRAHEAGVTGLSLHATGDYLLSSSEDQYWAFSDIQTGRVLTKVTDESAGCALTCAQFH
PDGLIFGTGTADSQIKIWDLKERTNVANFPGHSGPVTSIAFSENGYYLATGAQDSSVKLW
DLRKLKNFKTITLDNNYEVKSLVFDQSGTYLAVGGSDIRVYICKQWSEVLNFTDHTGLVT
GVAFGENAKFLTSAGMDRSLRFYSL
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgtctttggtttgtgcgatctgcaacgaggtgccggagcacccgtgcatctccccggtg
tccaatcatgtgttcgagcgcaggctgatcgagaagtacatcgcggagaacgggacggac
ccgatgaacggacagcccctgtccgaggagcagctggtggacattaaagtgactcatcct
attagaccaaaggctccatcagcaacaagcatccctgccattctcaagtctcttcaggat
gagtgggatgctgtcatgcttcatagcttcaccttgcggcagcagctgcagacgactcgc
caagaactctcacacgctctttatcaacacgacgccgcctgcagagtcatcgctcgactc
aacaaggaggtcactgctgccagagaagctcttgcgacacttaagcctcaagctggactg
gtgacccctcaggcagtcccagcctctcagccagcagcagcaggtgctggaggagagcct
atggagatcagcgaacaggtgggaatgactccagagatcattcagaagctccaagacaag
gctaccatcctcaccacagagagaaaaaagagaggaaaaaccgttcccgaggagctggtc
agagctgaggatctcagcaaatatcgccaaatggcctctcacgctggtcttcatagtgcc
agtgttcctggcattctggctctggatgtgtgtccctcagacaccaacaaagtgctcact
ggtggagctgataagaacgttgtggtgtttgacaagagtgaggagcagattgtggtgact
cttaaaggtcacgccaaaaaagtcacctctgtcattttccatccatctcagtctatggtc
ttctctgcctctcctgacgccaccatccgtgtgtggtccgttaccgggggcaactgcgta
caggtggtgcgtgcccacgaggcaggtgtcaccggactctctctgcacgccactggagac
tacctgctcagctcctccgaggatcagtactgggccttttctgatattcaaactggtaga
gttctcaccaaagttactgatgaaagtgctggctgcgctctcacctgtgctcagttccac
cccgatggactcattttcggcaccggtacggccgactcccagattaaaatttgggatctg
aaggagcgcaccaacgtggccaacttcccgggccactctggacccgtcacctccattgcg
ttctccgagaacggatactatctggccacaggcgctcaggatagctctgtgaaactgtgg
gatctgaggaaactgaaaaacttcaaaaccatcactctggacaacaactatgaggtgaag
tccctcgtgtttgatcagagcgggacgtacctggctgtcggaggatcggacattcgtgtc
tacatctgcaagcaatggtctgaggtcctcaacttcacagaccataccgggttggtgact
ggagtggcctttggagaaaatgcgaagttcctgacgtctgcaggaatggacagaagtctc
cgattttacagtttgtag
DBGET
integrated database retrieval system
