Kryptolebias marmoratus (mangrove rivulus): 108242792
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Entry
108242792 CDS
T05608
Symbol
smarcb1a
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-A
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr03082
ATP-dependent chromatin remodeling
kmr03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
108242792 (smarcb1a)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
108242792 (smarcb1a)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
kmr01009
]
108242792 (smarcb1a)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
kmr03021
]
108242792 (smarcb1a)
03036 Chromosome and associated proteins [BR:
kmr03036
]
108242792 (smarcb1a)
Protein phosphatases and associated proteins [BR:
kmr01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
108242792 (smarcb1a)
Transcription machinery [BR:
kmr03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
108242792 (smarcb1a)
SWI/SNF complex
108242792 (smarcb1a)
Chromosome and associated proteins [BR:
kmr03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
108242792 (smarcb1a)
PBAF complex
108242792 (smarcb1a)
SWI/SNF complex
108242792 (smarcb1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF5
INI1_DNA-bd
DUF1679
Motif
Other DBs
NCBI-GeneID:
108242792
NCBI-ProteinID:
XP_017283349
UniProt:
A0A3Q2ZP24
LinkDB
All DBs
Position
LG1:complement(28979246..28984557)
Genome browser
AA seq
373 aa
AA seq
DB search
MALSKTFGQKPVKFQLEEDGDFYMIGSEVGNYLRMFRGSLYKRYPSLWRKLATVEERKKI
VESSHDHGYTQLATSVTLLKASEVEEILEGNDEKYKAVSISTEPPAYLREQKAKRNSQWV
PTLPNSSHHLDAVPCSTTINRSRLGRDKKRTFPLCFDDHDPAVIHENATQPEVLVPIRLD
MEIEGQKLRDAFTWNMNEKLMTPEMFAEILCDDLDLNPLAFVPAIASAIRQQIESYPTDS
ILEDQTDQRVIIKLNIHVGNISLVDQFEWDMSERENSPEKFALKLCSELGLGGEFVTTIA
YSIRGQLSWHQRTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAEMEKKIRDQDRNT
RRMRRLANTAPAW
NT seq
1122 nt
NT seq
+upstream
nt +downstream
nt
atggcgctgagcaaaacgtttggacaaaaaccggtcaaatttcagctcgaagaggatgga
gacttttacatgattggatcggaggtgggaaactaccttcgtatgtttagaggctcgctg
tataaacgatacccgtcattatggagaaaactggcaacggtggaggaaaggaagaagata
gtggagtcctcacacgatcacggttacactcagcttgccaccagcgtgacgctgctgaaa
gcctcggaggttgaggagatccttgaaggaaacgatgagaagtacaaagctgtctccatc
agcaccgagccccccgcctacctcagggaacagaaggcaaagaggaacagtcagtgggtt
cccacgctgcccaacagttcccaccacctggacgccgtgccctgctccaccaccatcaac
cgcagccgactgggccgggacaagaagcggaccttccctctgtgctttgacgatcacgat
cctgcagtaatccatgaaaacgccacacagcccgaagttctcgtcccgatccgtctggac
atggagatcgagggtcagaaactccgagacgctttcacctggaatatgaacgagaagctc
atgacgcctgagatgttcgctgagattttgtgtgacgacctggacctgaacccgctggcc
ttcgtccccgccattgcctccgccatccgacagcagatcgaatcgtacccgacagacagc
atcctggaggaccagacggaccagagggtgatcatcaagctgaacatccacgtggggaat
atctccctggtggaccagttcgagtgggacatgtcggagagggagaactctcccgagaag
tttgccctgaagctgtgctcggaactcggcctgggcggagagttcgtcaccaccatcgcc
tacagcatccgaggtcagctgagctggcaccagcggacgtacgccttcagcgagaaccct
ctgcccacggtggagatcgccatcaggaacacgggtgatgccgaccagtggtgccccctg
ctggagaccctgacagacgccgagatggagaagaagatcagagaccaggacagaaacaca
aggcggatgaggcgtctggcgaacacagcgccggcatggtag
DBGET
integrated database retrieval system
