Kryptolebias marmoratus (mangrove rivulus): 108242941
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Entry
108242941 CDS
T05608
Symbol
pold1
Name
(RefSeq) DNA polymerase delta catalytic subunit
KO
K02327
DNA polymerase delta subunit 1 [EC:
2.7.7.7
]
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr03030
DNA replication
kmr03410
Base excision repair
kmr03420
Nucleotide excision repair
kmr03430
Mismatch repair
kmr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
108242941 (pold1)
03410 Base excision repair
108242941 (pold1)
03420 Nucleotide excision repair
108242941 (pold1)
03430 Mismatch repair
108242941 (pold1)
03440 Homologous recombination
108242941 (pold1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
kmr03032
]
108242941 (pold1)
03400 DNA repair and recombination proteins [BR:
kmr03400
]
108242941 (pold1)
Enzymes [BR:
kmr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
108242941 (pold1)
DNA replication proteins [BR:
kmr03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase delta complex
108242941 (pold1)
DNA repair and recombination proteins [BR:
kmr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase delta complex
108242941 (pold1)
MMR (mismatch excision repair)
DNA polymerase delta complex
108242941 (pold1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B
DNA_pol_B_exo1
zf-C4pol
POL3_N
REV3_N
DNA_pol_B_2
divDNApol
DNA_pol_B_exo2
Motif
Other DBs
NCBI-GeneID:
108242941
NCBI-ProteinID:
XP_017283591
LinkDB
All DBs
Position
LG12:complement(13483694..13492906)
Genome browser
AA seq
1109 aa
AA seq
DB search
MLIGMESKRRNGGPLLGGASQAKRGKPAGEWEDSPSHFEEELSMFDDGDMDAEEMEGQAG
HDVIPVGDLFSADLNPRWRRPHAPTLDPSSDTLVFQQIDLDYYLGASVAGMPGQSQGKVP
IIRMFGVTDSGNSVCCHIHGFAPYFYVPAPSGFTSNYLGEFKRELNSAVLKDMRSNKDNI
SITVLAVDITRKESMYGYHGQRSLDFLRITMSMPRLIAPAKRLLEQGLKFGPFPVQSYQS
FEANIDFEIRFMVDCGVVGCCWIELPKGKYRVREEKSAGDTDSKTPGKFSLSQYEVDVGW
MDLISHPAEGEWQRIAPLRVLSFDIECAGRKGIFPEPDKDPVIQIASMVQRQGETEPFIR
TVFTLQSCASIVGSQILCFTQEKQLLQSWAEFLRTVDPDIITGYNIQNFDFPYLLNRAAT
LKVNYFPYLGRMRGVKSVLRESSFQSKQMGRRENKTINMEGRVQFDLLQVLLRDYKLRSY
TLNAVSFHFLQEQKEDVQHSIITDLQNGNEQTRRRLAVYCLKDAYLPLRLLQKLMCVINY
MEMARVTGVPLTYLLSRGQQIKVVSQLLRQAMKQDLVMPVVKTEGGEDYTGATVIEPEKG
YYSVPITTLDFSSLYPSIMMAHNLCYTTLLQKGSAEKLGLSSDDFIKTPTSDQFVKSSVR
KGLLPEILENLLAARKRAKAELKKETDPFKKQVLDGRQLALKISANSVYGFTGAQVGKLP
CLEISQSVTGFGRQMIERTKQLVESKYTISNGYKADAKVIYGDTDSVMVKLGVTTVREAM
DIGKEAAEWVSSDFTPPIKLEFEKVYYPYLLINKKRYAGLYFSSSADTHDKMDCKGIETV
RRDNCPLVANLINTCLQKILIDRDPQGAVDHAKEVISDLLCNRIDISQLVITKELTRTAQ
EYAGKQAHVELAERMRKRDAGSAPNLGDRVPYVIIKAAKGAAAYMKSEDPIYVLENNIPI
DTQYYLEQQLSKPLLRIFEPILGESKAESILLKGDHTRCKTVLTSKVGGLMAFAQKRSTC
IGCKAVLKTDAAVCDFCKKKESELYQKEIFHLNALEERFSRLWTQCQRCQGSLHEDVLCT
SRDCPIFYMRKKVQKDLDDQSKLVSRFGW
NT seq
3330 nt
NT seq
+upstream
nt +downstream
nt
atgctaataggcatggagtctaaaagacgcaatggtggccctctcctgggcggtgcttct
caggccaagagaggtaaaccagctggtgagtgggaggacagtccttcgcacttcgaagag
gagttatccatgtttgacgacggggacatggatgctgaggagatggagggacaggcggga
catgatgtcattcctgtgggtgaccttttctcagcagaccttaaccctcgttggcgtcgg
cctcatgcccccacactggacccatcgtcggacactttggtgttccagcagattgatctg
gactattatttgggagcatcagtggccggcatgcctgggcaatcacaaggaaaagtacca
atcattaggatgtttggtgttacagacagcggcaacagtgtgtgttgtcatattcatggc
tttgcgccttatttctacgttcctgcaccaagtgggttcacgtctaattacctaggtgaa
tttaaaagagagttaaactcggctgtgctgaaggacatgcgctcaaacaaggacaacatc
tccatcacggtgctggctgtggacatcacccgcaaagaaagcatgtacggctaccatggg
caacgctctctggatttcttgaggataaccatgtcgatgcctcggctcatcgcacctgca
aagcgactgcttgaacaaggcttgaagtttggtcctttccccgtccagagttaccaatcc
ttcgaggccaacatagattttgaaatcaggttcatggtggactgtggtgtagtgggatgt
tgttggattgagcttcctaaaggcaagtacagagtgcgtgaagagaagagcgcgggggac
acggattctaagaccccaggaaagttttctttgtctcagtacgaagtggatgttggatgg
atggacttgattagccaccccgcagagggcgagtggcagaggatcgcaccacttcgagtc
ctcagctttgacatagagtgcgcaggaagaaaaggaatcttcccagaaccagataaagac
cccgtgattcagatcgcgtcgatggtccagcgtcagggtgagacagaacccttcattcgc
acagtgttcaccctgcagtcctgcgccagcatcgtcggctctcagatattatgctttact
caggagaaacagcttcttcagagttgggcagagtttttaaggacagttgacccggacatt
attactggatacaacatccagaactttgactttccctacctgctcaacagggcagctact
ttaaaggtgaattattttccatacttgggccgaatgcggggcgtcaagtcagttttgcga
gagtcgagtttccagagtaaacaaatgggtcgcagggagaacaagaccatcaacatggag
ggccgagtccagttcgacctgctgcaggttctcctaagggactacaagttacgctcctac
acactgaatgctgtaagtttccattttctgcaagaacagaaggaggacgtgcagcactcc
atcattactgacctgcagaacggcaatgagcaaacgcggcgcagattggcggtgtactgc
ctgaaagacgcctatctcccgctgcggctgctgcagaaactcatgtgtgtgatcaactac
atggagatggccagagtgaccggagtcccgctcacctacttgctctcaagaggacagcag
atcaaagttgtctctcagctgctgcggcaggcgatgaaacaggacctggtcatgcctgtt
gtaaagacagaaggtggagaggactacaccggagctacggtcattgaaccagagaaagga
tattacagcgtcccgatcaccactctggacttttcctcgctgtacccgtccatcatgatg
gcccacaatctgtgctacaccaccctgctgcagaaaggatctgcggagaaactgggactg
tcgtcagatgatttcatcaaaactccgacctcggatcagttcgtaaagagttcggtgaga
aaaggactccttccagagattttggagaacctgctggctgcccgaaaaagggccaaagca
gagctgaagaaggaaacggaccctttcaagaagcaggtgctggacggccgacagctggct
cttaaaatcagcgcaaattcagtgtatggcttcactggggcccaggtgggcaaactgccc
tgcttggagatctcgcagagcgtcactgggtttgggagacagatgatcgagcgaaccaag
cagctggttgagtccaaatacacaatttccaacggctataaagctgacgccaaggtcatt
tatggggacacagactctgtcatggtcaagcttggagttacgactgtgagggaggccatg
gatatcgggaaggaagcagctgagtgggtgtcctctgattttacaccccccatcaagttg
gagtttgagaaggtgtattacccgtacctgctgattaataagaagcgctacgcaggcctg
tatttctcctcaagtgcggacacgcatgacaagatggactgtaaaggcatcgagacggtc
cgcagggacaactgccctctggtggccaacctcatcaacacctgtctgcagaaaatcctc
atcgacagggatcctcagggtgccgtggatcacgccaaagaagtgatctcagacctgctc
tgcaatcgcatcgacatcagccagcttgtgatcacaaaggagctgacgcgcacagcccag
gagtacgctggcaagcaggcacacgtggagctggctgaaaggatgagaaaaagggatgcg
ggtagcgccccgaacctgggagacagagtcccgtacgtcatcatcaaggctgcgaaggga
gccgctgcttacatgaagtcagaggaccccatctacgtgctggagaacaacattcccatc
gacacccaatactacctggaacagcagctgtccaaacccctgctgaggatatttgagccc
atcctcggggagagcaaggcggagagcatcctgctaaagggtgaccacacacgctgtaag
accgtgttgacctcaaaggtcggaggcctcatggcatttgcccagaagagaagcacctgc
atcggctgcaaagctgtgctcaagacggatgcggctgtgtgtgatttctgcaagaaaaag
gagtctgagctgtatcaaaaagagatctttcacctgaatgcgttagaggagcgcttctcc
cgcctgtggactcagtgtcagcgctgccagggctcgctgcacgaggacgtgctctgcacc
agccgcgactgtcccatcttctacatgaggaagaaggttcagaaggatctggacgatcag
agcaagctggtgtctcgttttgggtggtga
DBGET
integrated database retrieval system
