Kryptolebias marmoratus (mangrove rivulus): 108243034
Help
Entry
108243034 CDS
T05608
Symbol
ssrp1a
Name
(RefSeq) FACT complex subunit SSRP1a isoform X1
KO
K09272
FACT complex subunit SSRP1/POB3
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
kmr03000
]
108243034 (ssrp1a)
03036 Chromosome and associated proteins [BR:
kmr03036
]
108243034 (ssrp1a)
Transcription factors [BR:
kmr03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG2-related
108243034 (ssrp1a)
Chromosome and associated proteins [BR:
kmr03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
FACT complex
108243034 (ssrp1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH1_SSRP1-like
Rttp106-like_middle
POB3_N
SSrecog
HMG_box
HMG_box_2
HMG_WDHD1
SSRP1_C
FERM_C1_MyoVII
Motif
Other DBs
NCBI-GeneID:
108243034
NCBI-ProteinID:
XP_017283704
LinkDB
All DBs
Position
LG9:18260229..18271411
Genome browser
AA seq
709 aa
AA seq
DB search
MGDTLEFNEIYQEVKGSWNDGRLRFSKQNVVYKNNKTGKVDSIPAAELSQAQWRRVCLGH
GIKLGTSSGHVYKYDGFRDTDFEKISEFFKTNYKVELSEKDMCVKGWNWGTAKFSGPLLS
FDINDTSAFEIPLSNVSQCATGKNEVTLEFHQNDDTEVSLMEVRFYVPPSQADERQDPVE
AFAQNVLSKADVIQATGDAVCIFKELQCLTPRGRYDIRIYPTFLHLHGKTFDYKIPYTTV
LRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKEEDINLTLNMSEEDVERRFE
GKLSKNMSGSLYEMVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKASSGLLYPLERGF
IYVHKPPVHLRFEEISCVNFARGTTTTRSFDFEIETKQGNQYTFSSIEREEYGKLFDFVN
AKKLNIKNRGFKEKKGMKGNIDEYSDSDEDQHDAYLERMKAEGKIREEGNDSDESDGSGS
DESFNPGEEDDDIAEEYDSNASASDSSEEGDDSEDESAKKKKKAKKPKVVRERKERKPRK
EKKQKDSGGPKRPMSAYMLWLNSSRERIKAENPGISITEISKKAGEMWRQLGKDEKEEWE
TKAGEAKRQYDKLKKEYKESGGGASSTPRKESKKSGGKKDEKKRKSAGGDKERDRGGASD
SFKSREFIETSEDSSSDSDRKSKAKRKKGADEEEEAAASTPSSSEEDSD
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atgggggacacgctggagttcaacgagatctaccaggaggtgaaaggctcctggaacgac
ggccggctgcgtttcagcaaacagaacgtggtttataagaacaacaagacggggaaggtg
gacagcatcccggccgcggagctcagccaggcccagtggaggcgggtgtgtttggggcac
ggcatcaagctgggcaccagctcgggtcacgtctacaagtacgacggcttcagggacacg
gacttcgagaagatttccgagtttttcaagacgaactacaaggtggagctgtcggagaag
gacatgtgcgtgaagggctggaactggggaacggccaagttctcagggccgctgctgtcg
ttcgacatcaacgacacctcggcgttcgagatccccctgtccaacgtgtcccagtgtgcc
accgggaagaacgaggtcaccctggagttccaccagaatgacgacacggaggtctccctc
atggaggtccgcttctacgtcccgcccagccaggcggatgaacggcaggaccccgtggag
gcgttcgcccagaacgtgttgtcgaaggccgacgtgatccaggccacgggagacgccgtg
tgcatcttcaaggagctgcagtgtctgacgcccagaggaaggtacgacatccggatctac
ccgacgttcctccacctgcacggtaagaccttcgactacaaaatcccgtacaccaccgtc
ctccgcctcttcctgctgccgcacaaagaccagaggcagatgttcttcgtgatcagcctg
gatccccccatcaagcagggtcagacccgctaccacttcctcattctgctcttctccaaa
gaagaggacatcaacctcaccctcaacatgagcgaggaggacgtggagcgccgctttgag
ggcaaactgagtaaaaacatgtcggggtctctttacgagatggtcagcagggtgatgaag
gccctggtcaaccgcaagatcaccgtccccggaaacttccagggccactccggggctcag
tgcatcacctgctcctacaaggcgtcctcgggcctcctctaccctctggagaggggcttc
atctacgtccacaagccgcccgtccacctgcgcttcgaggagatctcctgcgtgaacttc
gcccgaggcaccaccaccacgcggtccttcgacttcgagatcgagaccaagcaggggaac
cagtacacgttcagcagcatcgagagggaggagtacggcaaactgtttgacttcgtcaac
gccaagaagctcaacatcaagaacagaggcttcaaggagaagaagggcatgaaggggaac
atcgacgagtacagcgactcggacgaggaccagcacgacgcctacctggagaggatgaag
gccgagggcaagatccgggaggagggcaacgacagcgacgagtcggacggcagcggcagc
gacgaatctttcaaccccggagaggaagatgatgacatcgctgaagagtacgacagcaac
gcctctgccagcgacagcagtgaggaaggcgacgacagtgaagacgagagcgccaagaag
aagaagaaggccaaaaaacccaaagtcgtgagagagagaaaagaaaggaaaccccgcaaa
gagaagaagcagaaggacagcggcgggccgaagcggccgatgagcgcctacatgctgtgg
ctgaactccagccgcgagcgcatcaaggcggagaaccccggcatctccatcaccgagatc
tccaagaaggccggggagatgtggaggcagctgggcaaagacgagaaggaggagtgggag
acgaaagccggcgaggcgaagaggcagtacgacaaactaaagaaggagtacaaggagagc
ggcggcggagcgtcctcgacccccaggaaggagagtaaaaaatccggaggcaaaaaagac
gagaagaagagaaagtccgccggtggggacaaggagcgggaccggggaggagccagcgac
agcttcaagagccgcgagttcatcgagaccagtgaggacagctcctccgactcggaccgc
aagagcaaagccaagaggaaaaagggagctgatgaagaggaggaggcggcggcgtccacg
ccctccagctcggaggaagactccgattaa
DBGET
integrated database retrieval system
