Kryptolebias marmoratus (mangrove rivulus): 108243182
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Entry
108243182 CDS
T05608
Symbol
prdm1a
Name
(RefSeq) PR domain zinc finger protein 1a
KO
K24501
PR domain zinc finger protein 1 [EC:2.1.1.-]
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
kmr03000
]
108243182 (prdm1a)
Transcription factors [BR:
kmr03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
108243182 (prdm1a)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
PRDM2_PR
zf-H2C2_2
zf-C2H2
SET
zf-C2H2_4
Zf-C2H2_ZNF451_C
C2CH-3rd_BIRD-IDD
zf-C2H2_6
zf-C2H2_jaz
zf-met
zf-C2HE
B129_C2H2-zf
Zap1_zf1
Motif
Other DBs
NCBI-GeneID:
108243182
NCBI-ProteinID:
XP_017283952
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All DBs
Position
LG16:4494906..4509061
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AA seq
952 aa
AA seq
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MTQHAWCCFLGGGGARLKKWVWLSKRERERERERERERLSKRDVDFVRHLKTGIQVDHTH
TLLRTDAHTVTPEWSISTWSKKRKPAPVFTHTLSSHTYPEGISLVVPMCGWEQSYTATSH
SSAMLTSEGARTMEQDDRNHSTKMASTATSSDGAETMTDTDVDMEMEEADMTQWREKEFE
EKYTYIVKDTALETGPDSDAMMTTTRAEASLPRNLVFKHLAGSKEVVGVCSREYIPKGTR
FGPLVGEIYTAESVPKDANRKYFWRIYVDGEFHHFVDGLDETRSNWMRYVNPAHSAAEQN
LAACQNGMEIYFYTVKPVPAGAELLVWYCHDFARRLRYTPSGELMMQKLKQSLLEAKQQQ
VDGEGSRTEASSPSPIAVTPSPPKREHSVLSILRGTNSTASSSTTKREPSRPLPTRPLCA
DSPERPLYPRAIYPPLRRHLPIAEDFLSHKHGQLVYPLTHSPGKQSSATASPSARSSPDD
SPHSSPSGPAPLQVSLYPTGLSSYPGYSPPSAPLSYTPGAPYPSYLLPHHYPLPAGGVPA
VGGIFPRIYPVYSSLLPPQVPLLPSDPAGRRFFMPEPVHPTSISGHRDFFLPGPTSAFSA
TTTLKDKAGPYTMHPNLHGPAHAPSSGSPTVGTAPPSEQVPTKPTSALLGNSSEHHPDEE
AINLTKMKRGAGSAGYKALPYPLKKQNGKIKYECNVCSKTFGQLSNLKVHLRVHSGERPF
KCQTCSKGFTQLAHLQKHYLVHTGEKPHECQVCHKRFSSTSNLKTHLRLHSGEKPYHCKL
CPAKFTQFVHLKLHKRLHSRERPHKCPHCHHHYIHLCSLRLHLKGYCLAANSGSGSPNVS
SQASLEEIHRANEEIERFDISDHAERLEQLQGGVEMDTMLEKQVLGMLWRETDLKSPHFH
TYHNGSVTELLSAGYGAYDSPNETSVIKMRHSSPIPPLSANITVKKESEDHA
NT seq
2859 nt
NT seq
+upstream
nt +downstream
nt
atgactcaacacgcctggtgctgtttccttggaggaggaggggccaggcttaagaagtgg
gtgtggctttcaaagagagagagagagagagagagagagagagagagagagagacttagt
aagagagatgttgattttgtcaggcatttgaaaacaggaatccaagtggatcacacacac
acactcctgcgcacagacgctcacacagttacgccagagtggagtatcagcacttggagc
aagaagaggaaacctgcacctgtcttcacacacactctgtcctcacacacatatccagag
gggatctcactggtcgtccctatgtgtggatgggagcaaagttacacggcgacctctcat
agctcggccatgttgaccagtgagggggcgcgcaccatggagcaggatgacagaaaccac
agcaccaagatggcctctacagccacgagttcagatggagctgaaacaatgactgacaca
gacgtcgacatggagatggaggaggcagacatgacacaatggagagagaaggagtttgag
gagaagtacacatacattgtcaaagacacggcgttggagacggggccagacagtgatgct
atgatgacgacaacaagagcagaggcgtcgctgccccggaacctggtcttcaaacacctg
gcaggcagcaaggaggtggttggagtgtgcagcagggagtacatccccaaaggaactcgc
tttggtcccctggtgggcgagatctatacagccgaaagcgtccccaaagacgccaaccgc
aagtacttctggaggatctatgtggatggtgagtttcaccactttgttgatggtctggat
gagactcgctctaactggatgcggtacgtgaacccggcccactcggcagcagagcagaac
ctggctgcatgtcagaacggcatggagatttatttctacactgtgaagcctgtacctgct
ggcgctgagctgctcgtctggtactgtcacgacttcgcccgacgcctgcgatacacaccg
tccggagagctgatgatgcagaaacttaagcagtcacttttggaagcgaagcagcagcag
gtagacggagaggggagcagaactgaagcgtccagcccatctcctatcgcagtgacgccc
agcccacccaagagagagcacagtgtcctttccattctgcgtggcaccaacagcaccgca
tcctcctccaccactaagagggagcccagccgtccactacctacccgcccactgtgtgct
gacagcccagaacgccccctgtacccccgcgccatctacccacctctcaggcgacatctt
cccatcgcagaagatttccttagccacaagcatggtcagcttgtttaccccttaacccat
tcccctggtaaacagtcttcagccacagctagtccatctgcaagaagcagcccagatgac
agtcctcacagtagcccttctggtccagcaccattacaagtttctctctacccaactgga
ctgagttcctaccctggttactcccctccatctgccccactctcctacactccgggagcc
ccctacccaagttaccttcttccccatcactatcctctgcctgctggtggtgtccctgcc
gtaggtggaatctttcctaggatctatcctgtctacagcagcctcttaccccctcaagtg
cccctcctgccttctgacccagcaggaaggcgcttttttatgcctgaacctgtgcacccc
acctctatctctggccacagagacttcttccttcctgggccaaccagtgccttctcagcc
actactactctgaaagacaaagcagggccctataccatgcaccctaacctgcatggacca
gctcatgctccctctagcggctcaccgactgttggcacagcccctcccagtgagcaggtg
cccactaagcctacttctgccctcctgggcaattctagcgaacatcatcctgatgaagag
gctataaacctgaccaaaatgaagcgtggtgctggctcagcaggctacaaggcgctgcct
tatcctctgaaaaagcagaatggtaaaatcaagtatgagtgcaacgtgtgcagtaagacc
ttcgggcagctctcaaacctgaaggttcatcttcgtgtgcacagtggagagagacccttc
aaatgtcaaacttgtagcaaaggtttcactcagcttgctcacttgcaaaaacactacttg
gttcacactggagagaagccacatgaatgccaggtatgtcacaagcgcttcagcagcacc
agcaacctgaaaactcacctgcgcctccactcaggggagaagccgtatcactgcaaactc
tgcccagctaagttcacgcaatttgtccacctcaagctgcacaagcgccttcattcccgg
gagcgtccacacaaatgtccccactgccatcaccactacatccacttgtgcagcctgcga
cttcacctgaagggctattgcctggcagcaaactctggctctggtagtccaaatgtttct
agccaggcttcactagaggagatccaccgcgccaacgaggagatcgagcgctttgacata
agtgaccatgcagagcgactagagcagctgcagggaggggtggagatggataccatgttg
gagaagcaggtcttggggatgctgtggagggagaccgaccttaagtccccccactttcac
acctaccataatggcagtgtcacagagctactgtcagcaggttatggtgcctatgactct
ccaaatgagacatcagtaatcaagatgcggcacagcagccccatcccaccactctctgct
aatattactgtcaagaaagagtcagaggatcacgcttaa
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