Kryptolebias marmoratus (mangrove rivulus): 108243605
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Entry
108243605 CDS
T05608
Symbol
lig3
Name
(RefSeq) DNA ligase 3
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
108243605 (lig3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kmr03400
]
108243605 (lig3)
Enzymes [BR:
kmr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
108243605 (lig3)
DNA repair and recombination proteins [BR:
kmr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
108243605 (lig3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
RNA_ligase
BRCT_2
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
108243605
NCBI-ProteinID:
XP_017284664
UniProt:
A0A3Q3FZ08
LinkDB
All DBs
Position
LG13:complement(2708969..2733370)
Genome browser
AA seq
1011 aa
AA seq
DB search
MQRHLILFVRKSVWVRRQSFGSLVGCQQLSRLLRAVLVPSHAEHLPSPSCSLQLSGEISH
FTPVSHKQGLLQRFPPWSFLHRRSSNRPDMSEQRFIVEYAKRGTAGCKKCKDKIPKGVVR
IGKIVPNPFSESAGEMKEWYHVKCIFEKLERARATTKKIEDLTELEGWEELQDEDKELIN
KHVSDLMAKVNSSPKKKVQAKLNTTGQLMAPPADPSVNAPRKFSGFTAAKAGSSSSPGPS
LSSSPSPSKGSPLSKQLCDPQHKDCLFREFRKLCATVAENNSYNTKTQIIEKFLKKGTGG
DKFHGDLFLTVKLLLPGVVKSVYNLNDKQIVKLFSRIFRCNQEEMVRDLEQGDVSETVRM
FFDDSKSFPPAAKSLLTIQEVDSSLTRLAQLTKEDEQQNELEAISKKCTSNDLKCIVRLI
KHDLKMNAGAKHILDAVDPNAYDAFKASRNLSDVIERVLRNQQEASNGSGPRKLLAVEAS
LMTPVQPMLAEACKSIEYAMKKCPNGMYCEIKYDGERVQVHKSGNTFSYFSRSLKPVLPH
KVAHFKDYIPQAFPGGHSMILDAEVLLIDTKSGKPLPFGTLGVHKKAAFQDANVCLFVFD
CIYFNGVSLMERPLSERRKFLDDNMVEVPNRILFSEMKHVTRAADLADMITRVIREGLEG
LVLKDIKGTYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGKGSNGGIMSSFLMGCY
DPDAKKWCTVTKCSGGYDDAMLARLQKELDVIKISKDPSKIPGWLKIIKNYYPDFIIRDP
EQAPVWEITGAEFSKSEMHTADGISIRFPRMTRIRDDKDWKSATNLHQLKELFRISKEHC
DFKVTAGLSASSDRGSSGGDSGGSSPSSNRKTPAKKTSNSTPAKPKALKSESRTPGSEAP
GAKKVRKSEQSAHSNGQNRPKTTTSQLLEPRNDKTLLDIFSGVKLFLPVSVQDFHRLRRY
FVAYDGDLVPDYNTATATHTLAEPEDDSGAQKVSSGWIWECIRRRRVVPPC
NT seq
3036 nt
NT seq
+upstream
nt +downstream
nt
atgcaaagacatctcattttatttgttcgtaagtccgtctgggtgcgtcgacagtcgttt
ggttcacttgttgggtgtcagcaactctccagattgctcagagccgtcctcgtcccttca
cacgccgaacatcttccctccccttcgtgttcattacaactttcaggggaaattagtcat
tttaccccagtgtcccataaacaaggccttctccaaaggtttcctccctggtctttcctg
caccgtcgttcgtctaaccggcccgatatgtcagagcagaggttcatcgtggaatatgcc
aaacgcggcaccgcaggatgtaagaaatgcaaggacaaaatcccaaagggcgtagtgcgc
atagggaagatcgtgccgaaccctttcagcgagtctgcgggggagatgaaggagtggtat
cacgtgaagtgcatatttgagaagctggaaagggcaagagccaccacgaagaagatcgaa
gacctgacggagctggagggctgggaggagctgcaggacgaggacaaagagctcattaac
aaacacgtttcagacctgatggccaaagtcaactcgagtccgaagaagaaggttcaggcc
aagctgaacaccacgggtcagctgatggctcctcccgctgacccgtctgtcaacgcgccg
cgcaagttctcaggcttcacggctgcgaaggccggcagctccagcagccccgggccgtcc
ctgtcctcgtctccgtccccgtccaaaggcagccccctgtccaaacagctgtgtgacccc
cagcacaaggactgcctcttcagagagtttcggaagctctgcgcgacggtggcggagaac
aacagctacaacaccaagacgcagattatagagaagttcctgaagaaaggcaccggagga
gataagttccacggagatcttttcctgactgtgaagttgctcctgcccggcgtcgtgaaa
agtgtttataacctcaacgacaagcagatcgtaaaactcttcagccgcattttccgttgc
aaccaggaggagatggtgcgagatctggagcagggcgacgtgtctgagacggtgaggatg
ttctttgacgacagcaagtcgtttcctcctgctgccaagagcctgctgaccatccaggaa
gtagactcgtccttgacccgcctcgctcagctgacgaaggaggacgagcagcagaacgag
ctggaggccatttctaaaaaatgcaccagcaacgacctgaaatgcatcgtcagattaatt
aaacacgacttgaagatgaacgccggagcgaaacacatcttggacgccgtggatccaaac
gcctacgatgcgttcaaggcctcccgtaacctgagcgacgtgatcgagagggttctgagg
aaccagcaggaggcgtccaacgggtcgggacccaggaagctcctcgctgtggaggcctcg
ctgatgacccccgtccagccgatgctggccgaggcgtgtaaatccatcgagtacgccatg
aagaagtgccctaacgggatgtactgcgagatcaagtacgacggcgagcgcgtgcaggtc
cacaagagcgggaacacattcagctacttcagccgcagcctcaaaccggttctgcctcac
aaggtggctcatttcaaagactacatccctcaggcgttccccggcggccacagcatgatt
ctggacgccgaagtccttttaatcgacacgaagagcggcaagccgctgccgtttgggacc
ctgggcgttcacaagaaagcggcctttcaagacgccaacgtgtgcctttttgtgtttgac
tgcatctacttcaatggcgtgagtctgatggagaggcctttgagtgaacgcaggaagttc
ctggacgacaacatggttgaagttcccaacagaatcctgttctcagaaatgaaacacgtc
acgagggcagcagacctggctgacatgataactcgtgtcatcagagaaggactggaaggt
ctggtgctgaaagacataaagggcacctatgagccggggaaacgccactggctgaaagtg
aagaaggattatttgaatgaaggagcgatggccgacacggccgacctggtggtgctggga
gcgttctacgggaaaggctccaacgggggcatcatgtccagcttcctcatgggctgctac
gacccagacgccaagaagtggtgcacagtcaccaagtgctccggaggctacgatgacgcc
atgttggcccggctccagaaggagctggacgtgatcaaaatcagcaaggacccaagcaaa
atccccggctggttaaaaatcatcaagaactattatccagactttattatccgtgatcca
gagcaagctccagtttgggagatcaccggcgccgagttctccaaatctgagatgcacacc
gccgacggcatctccatccgttttccccgcatgacgcgaatccgcgacgacaaggactgg
aagagcgccaccaacctgcaccagctgaaggagctgttccgcatatccaaggagcactgc
gactttaaggtgaccgccggcctgtcggcgtccagcgacagaggctcatcagggggggac
agcggcgggagctcgccgtcgtccaacagaaagactccagccaagaagacaagtaacagc
acaccggccaagccgaaggcgctgaagtcagagtctcgtactcccggctccgaggcgccc
ggtgcgaagaaggtgaggaagagcgaacaaagtgctcacagcaacgggcaaaaccgacca
aagacgacgacgtctcaactgctggaaccgaggaacgacaagacgctgctggacatcttc
agcggcgtgaagctcttcctgcccgtctccgttcaggacttccacagactcaggcggtac
ttcgtggcgtacgacggcgacttggtgccggactacaacaccgccactgccacgcacacc
ctggctgaacccgaagacgacagcggcgcccagaaggtctcgtccggctggatctgggag
tgcatccgcaggagacgcgtcgtacctccctgctga
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