KEGG T05608: 108243675

Kryptolebias marmoratus (mangrove rivulus): 108243675

Entry

108243675         CDS       T05608

Symbol

xab2

Name

(RefSeq) pre-mRNA-splicing factor SYF1

K12867

pre-mRNA-splicing factor SYF1

Organism

kmr Kryptolebias marmoratus (mangrove rivulus)

Pathway

kmr03040

Spliceosome

Brite

KEGG Orthology (KO) [BR:kmr00001]
09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    108243675 (xab2)
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:kmr03019]
    108243675 (xab2)
   03041 Spliceosome [BR:kmr03041]
    108243675 (xab2)
Messenger RNA biogenesis [BR:kmr03019]
Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     108243675 (xab2)
Spliceosome [BR:kmr03041]
Complex B
  Other components
   Prp19-related factors
    108243675 (xab2)
Complex C
    108243675 (xab2)

SSDB

Motif

Pfam:

HAT_Syf1_CNRKL1_C HAT_Syf1_M HAT_Syf1_CNRKL1_N HAT_PRP39_C HAT_PRP39_N TPR_14 Suf TPR_12 TPR_2 TPR_8 TPR_15 TPR_16 ARM_TT21_C ARM_TT21 SNAP NRDE-2 TPR_1 Tcf25

Other DBs

NCBI-GeneID:

108243675

NCBI-ProteinID:

XP_017284774

UniProt:

A0A3Q3GB84

LinkDB

Position

LG12:complement(7890525..7898469)

AA seq 849 aa
MPSLNGKADVIFEDDDLPYEEEIIRNPYSVKCWMRYIEFKQNGPKSTLNMIYERALRELP
GSYKLWYNYLRERRKQVKGKCITEPAYEEVNNCHERALVFMHKMPRIWIDYCQFLVSQSK
ITRSRRTFDRALRALPVTQHPRIWPLYLRFVRNLPLPETAIRVYRRYLKLSPENAEEYID
YLRSIGRLDEAAVRLAAIVNDESFVSKEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETTAEMGQEEEEDIDLELRLARFEQLIARRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGTPRQIINTYTEAVQTVDPMKATGKPHSLWVSFAKFYEENEQLDDARTIFEKATKVN
YKQVDDLAAVWCEYGEMELRHENYDQALRILRKATAIPSKKAEYFDSSEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEESFKAYERGI
ALFKWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKFAKTIYLLYAKLEEE
YGLARHAMAVYERATQAVETEERHHMFNIYIKRAAEIYGVTYTRAIYQKAIEVLPDEHAR
EMCLRFADMESKLGEIDRGRAIYSYCSQICDPRVTAHFWQTWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMLKATTSSTGTVSDLAPGQMGIDDMKMLEQKAQQLAAEAEQ
DKPKPKEKILFVRSDTSRSELAELSKQANPDEINIDDDDEEDDEEQGPEEVQLEQKSVPT
AVFGGLKED

NT seq 2550 nt +upstreamnt +downstreamnt
atgccttccttaaacggaaaagctgatgttatctttgaggatgatgatcttccttatgaa
gaggagattattaggaatccatactccgtcaagtgttggatgcgttacattgaattcaag
cagaatggacctaaatctactctcaacatgatatatgagagggctctgagggaattgcct
ggaagctataaattgtggtacaattatctgagagagagacggaaacaagttaagggaaaa
tgtataaccgaaccagcctatgaggaggtcaataattgccacgaaagggcactggtgttc
atgcacaagatgcctaggatatggattgattactgccagttcctcgtatctcagtctaag
atcacaagaagtcgacgaacatttgaccgtgcactgagagctctaccagtaactcagcat
ccacgaatttggcctttgtatcttcgctttgttcgcaacttgcccctacctgaaacagcc
attcgggtctatcggaggtacctgaagctttctccagaaaatgcagaggaatacattgat
tacttgcggtctattggtcgcttggatgaagcagctgtgcgactagcagctattgtcaat
gatgaaagctttgtgtccaaagagggcaagtctaactatcaactgtggcatgagctatgc
gacctgatttctcaaaatcctgataaagtgacctctctaaatgttggagccatcatccga
ggaggcctcacacgcttcacagaccaacttggaaaactttggtgctccttagctgactat
tacatcaggagtggccattttgagaaagcacgagatgtgtatgaggaagccatccttaca
gtggtaacagtaagggatttcacgcaagtgtttgatagttatgctcagtttgaagagagc
atgattgctgccaaaatggagaccactgctgagatgggacaagaggaggaagaagacata
gacttggagcttagactggcacgctttgagcagctgatagctcgacgtcctctcctactg
aacagtgtactactgaggcaaaacccccataatgttcatgagtggcacaaacgtgtaaaa
ctgtatgaaggaacgccacgacagatcatcaacacttacactgaagcagtgcagaccgtg
gatccaatgaaggccactggaaagcctcattctctctgggtttcttttgctaaattctat
gaagaaaatgaacaactggatgatgctcggacaatcttcgaaaaggctacaaaggtgaac
tacaagcaagtggatgaccttgctgcagtgtggtgtgaatatggagaaatggagcttcgg
catgagaactatgatcaggcgttacgcattttgaggaaagctacagccatcccatccaag
aaagctgagtactttgattcatctgagccagtccaaaacagagtctacaagtccttgaag
gtctggtctatgctggctgacttggaggaaagtcttggcactttccagtctacaaaagcg
gtttatgatcgtattattgatctacgcatcgccactccacaaatcatcatcaactatgcc
atgttccttgaagagcacaactactttgaagaaagctttaaagcatatgagcgagggatc
gctctcttcaagtggccaaatgtttatgacatctggaacacctacctgacaaagttcatt
gatcgttacgggggaaagaagttggagagagctcgggatttatttgaacaggccctggac
ggctgccctgctaagtttgccaagaccatttacctgttgtatgccaaactggaagaggag
tatggattggcacgacatgccatggctgtctatgaaagagcaacacaggctgtggaaact
gaagagagacaccacatgtttaatatctacatcaagagagcagctgaaatttatggagtt
acatataccagagcaatttatcagaaggctattgaggtccttcctgatgagcatgcaagg
gaaatgtgcctgcgatttgcagacatggagagtaaacttggtgagattgaccggggcaga
gcaatttattcctactgctctcaaatctgtgacccaagggttacagctcatttctggcaa
acctggaaagaatttgagatccgccatggaaatgaggacaccattagagagatgttaagg
atcaaacgcagtgttcaggctacctacaacacccaggtcaattttatgtcctctcaaatg
ctgaaggctacaacaagctccacaggcaccgtgtcagatcttgctcctggccagatggga
attgatgatatgaagatgttggagcaaaaagcacagcaacttgctgcagaggctgagcaa
gataaacccaaacctaaagaaaagattctgtttgtcaggagtgacacttctcgcagtgag
ttggctgagctttccaaacaggccaatccagatgagataaacattgatgatgatgatgaa
gaagatgatgaagagcaaggaccagaggaggtgcagcttgagcagaagagtgtcccaaca
gcggtctttggagggcttaaagaggactga

DBGET integrated database retrieval system