Kryptolebias marmoratus (mangrove rivulus): 108243746
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Entry
108243746 CDS
T05608
Symbol
col5a3a
Name
(RefSeq) collagen, type V, alpha 3a isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
108243746 (col5a3a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
kmr00536
]
108243746 (col5a3a)
Glycosaminoglycan binding proteins [BR:
kmr00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
108243746 (col5a3a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
PROSER3
AP3D1
KAT3
Motif
Other DBs
NCBI-GeneID:
108243746
NCBI-ProteinID:
XP_017284893
LinkDB
All DBs
Position
LG12:complement(7736417..7782086)
Genome browser
AA seq
1870 aa
AA seq
DB search
MDSLIRTRLRRRIHLFLFILLHLTTTQAADPIDVLRALGLSENMKGVSLEAGLCTSRRGT
EETDLAYKIKKIQLSAPTKQLFPDSKFPENFSLMTTLRATKGSQFFLLSVYDDQGVQQLG
LEVGRSPVFLYEDQHGQPTPELYPTFRKINLADGKWHRIAFSVHNKTVTLYLDCERVKTL
DLLRGDDAVVSTEGVTVFGTRLLDEELFEGDIQQLMILEDPQAAANYCVNYIPDCDFALP
HNIQAPSQQEHFHLESDALMQSDEPAEQKKVSKTGRREKKNKKKRDKSSRGKRKGKGKKG
SRKKKHEEEGVEEGFLRISTTLPEFQTQEPFQPTDLPDIRSTLTTVVLTQAFDRTIMEMS
THKPDFTTEAPTVVPSILPVSRVTKEEGTPLEKAVVVEYEDGLYRDLFEDFSVSTVTVSP
NVTEHEIFEYEDFKNDTELEYEEYEIYEDDFDFAERERAETLNVEATLRAEKGQKGETAI
IEPGLLVIGPSGLPGPEGLPGPAGPTGPPGPRGDPGELGPQGRPGLPGVDGIPGPPGTLL
MLPFHYGGDSQKGPVVSPQEAQALAILQQTKMSLQGPPGPMGLTGRPGPVGVPGPSGLKG
DLGDNGPPGLRGLPGPPGINGKPGKRGRAGVDGGRGAPGETGAKGDRGFDGLPGLPGNKG
HKGDRGRPGPQGPVGEPGEKGSDGPVGPRGQPGEPGPRGLVGPRGPPGPPGQAGIHGIDG
VQGSKGNQGSSGEIGPPGQQGNPGVQGFPGPQGPIGLPGEKGPAGKQGMQGLPGVDGPPG
HPGREGPPGEKGIQGLLGIQGPVGYPGIRGVKGADGVRGLKGSKGEKGEDGFPGTKGDMG
VKGDRGDNGVPGPRGEDGPEGLKGQAGPVGDAGSAGIAGEKGKLGVPGLPGYPGRQGPKG
TLGFPGVAGMLGEKGRRGPAGQPGSGGQRGPNGARGGRGPKGPTGKPGEKGSAGQDGPPG
APGDQGPQGAQGGHGEPGPKGPNGPPGKDGLPGHPGQRGEPGFQGKNGPPGPPGVVGPQG
KTGETGPTGDRGHPGAPGPPGEHGLPGTAGKEGAKGDPGPAGIPGKNGPPGLKGFRGGRG
TPGAAGPPGLKGGEGLPGIAGSNGATGERGPAGPAGAIGQPGRPGSVGPVGPVGEKGEPG
EKGAVGPAGHDGEPGPTGLPGVAGSPGPPGEDGDKGEPGGPGQKGSKGDKGEAGPSGPVG
IQGPVGQSGPSGADGEPGPRGQIGVYGAKGDEGPRGFRGPTGPSGLQGMPGPPGEKGESG
HVGLMGPPGQHGPRGPQGPIGAEGPPGLPGGVGQPGLVGEKGEDGEAGDPGAVGEPGPPG
TKGDVGEKGDSGPPGAAGPPGTRGSPGEDGSKGNLGPIGFPGDLGPPGEPGANGVDGTPG
PKGDNGELGKAGPPGASGEPGPPGPPGRRGHVGAAGKEGKQGMKGAKGATGTSGLVGKTG
PVGPQGPPGRPGPEGLRGIPGPAGEQGLNGPPGQTGPPGPIGPPGLPGLKGDPGKKGEKG
HGGLIGLIGPPGEPGEKGDRGLPGIQGLQGTKGDEGVTGPPGPIGAPGQPGLSGPAGEKG
SKGEPGGFGIIGDPGPAGPPGPPGPPATVVQTLPIWEGRRKRRRHSDQTEGTAVSREKNV
HSGTEDFLQGDQPLEDAEGMEEVFATLSSMKNEVEFMRRPLGTFDSPARTCKELMMIQPN
YKDGDYWIDPNQGCHRDSIKVFCNFTAFGETCLYPDKRIKMVKLAAWSKEKPGTWFSQYK
KGKQFSYIDSDGNPVHVVQLTFLKLLSATAKQSFTYTCQNSAGWFDSTSHSYQHALRFRG
SNDEELTQAKSPFITAVHDGCQIRKGQERTVLEIDSPSAELLPIIDVAPADFGSNNQKFG
FQVGQVCFTG
NT seq
5613 nt
NT seq
+upstream
nt +downstream
nt
atggacagtttaataaggaccaggttgcgcagaagaatacatctgtttctttttatctta
cttcatctaacgacgactcaagctgctgatcctattgatgttctgcgagcgcttgggctg
tcagagaacatgaagggggtgtccttggaggctggtctctgcaccagcaggaggggcacg
gaggagacggacctggcttacaagatcaaaaagatccagctcagcgctcccactaaacag
ctattccctgattctaaatttcctgagaatttttcattgatgactaccttaagagctaca
aaaggctcccagttcttccttctttcagtctacgatgaccagggggtacagcagctggga
ctcgaagtggggcggtcacctgtcttcctgtatgaggaccagcatggacaacctactcca
gaactataccccactttcaggaagatcaacctggctgatggaaaatggcacaggatagcc
tttagtgtgcacaacaagactgtgaccctttacttggactgtgagagggttaagaccctg
gatcttctgcgaggagatgatgctgtggtcagcacagagggggtcactgtgtttggaaca
cgcctgctggatgaagaactttttgagggagatattcagcagctgatgattctggaggac
ccccaggctgctgccaactattgtgtcaactatataccagactgtgactttgctttgcca
cacaacattcaagctcccagccagcaagagcacttccatcttgagtctgatgccttgatg
caaagtgacgaaccagctgaacaaaagaaggtctccaaaacgggcaggagagagaaaaag
aacaaaaagaagagggacaaaagttctcgaggaaaacgcaaaggcaagggcaagaagggg
tccagaaagaaaaagcatgaagaggagggtgttgaggaaggcttccttagaatatctaca
actctgccagagtttcagacacaggaacccttccagcccacagatcttccagacattagg
agcacccttacaacagtcgttctcactcaagcttttgacagaaccatcatggagatgtcc
acacataaacccgacttcacaactgaggctcccactgtggtgcccagcatactgcctgta
tccagggttaccaaggaggagggcacaccactggagaaggcagtggtggtggagtatgaa
gatggtctttacagagacctgtttgaagatttctcagtttccacagtaactgtgagccca
aatgttactgaacatgagatttttgaatatgaagatttcaagaatgacacagagttggag
tatgaagagtatgaaatctacgaggatgactttgactttgcagaacgagaaagagcggaa
acattgaatgtcgaggctacactcagagcagaaaagggccaaaagggagagacagctatt
attgaaccgggtcttttagtgataggaccctcaggtctaccaggaccagaggggctccct
ggaccagctggaccaacaggtcctccaggacctagaggagatccgggtgaactgggtccc
caaggacgccctggtcttcctggggttgatggaatcccaggtcctccaggaaccctgctg
atgctaccatttcattatggaggggattcacaaaaggggccagtggtgtccccccaggag
gcacaagcactagctatcctgcaacagaccaagatgtcacttcaggggcctccaggtcca
atgggtcttacaggacgaccaggcccggtgggtgttccaggtccatctgggcttaaaggt
gacctgggagacaacggaccgcctggacttcgtggtttgccaggtccccctgggattaat
ggaaagccaggcaagaggggacgtgcaggtgtagacggaggtcgtggagctccaggtgaa
acaggtgcaaagggtgacagaggctttgacggtctgccaggtctcccaggaaacaaggga
cacaaaggggacagaggaagacctggtcctcaagggcctgttggagaaccaggagagaag
gggtctgatggacctgtggggccaagagggcaaccaggcgaacctggtcctcgaggtcta
gttgggccaagggggccgcccgggccacctggacaagcagggattcatggaattgatgga
gttcaagggtcaaagggcaaccagggctcatctggagaaatagggcccccaggtcaacaa
ggaaatcccggagtgcagggctttcctggtcctcagggtcctattggactgccaggagag
aagggtcctgcgggtaaacaaggaatgcaaggactacccggtgttgacggtcctcctggt
cacccaggaagagagggtccgccaggagaaaaaggcatccaaggtttacttggcatccag
gggcctgttgggtatcctggcattcgtggagtcaagggggcagatggagttagaggtctc
aaggggagcaaaggagaaaaaggagaagatggctttccagggactaagggtgacatgggt
gtcaaaggagacaggggtgataacggagttcctggtcctcgcggagaggatggaccagag
gggctgaagggtcaagcaggacctgtaggagatgcaggatcagctggaatagcaggggaa
aagggcaaacttggtgtgcctggcttgccaggttacccaggaagacaaggtcctaaggga
acacttggtttccccggtgtggccggcatgctgggagagaaaggaagaaggggtccagct
ggtcagccaggttcagggggccagcgaggtcctaatggagcccgagggggaagaggacca
aaggggccaactggaaagcctggagaaaagggttctgctggacaagatggtcctccagga
gctcccggagaccagggacctcaaggagcacaaggggggcatggtgaaccaggacccaaa
ggacctaatggtccacctggaaaggatggattaccaggccatccgggtcagagaggagaa
ccaggcttccaaggaaagaatggacctccgggacccccaggagttgttggaccacagggg
aaaactggtgagacagggccaactggagatagaggtcatccaggtgcaccaggaccacca
ggtgagcatggcttaccaggaactgctggaaaagagggtgccaagggagatccaggtcca
gcaggaatcccaggaaagaatggacctcctgggcttaaaggctttagagggggcagagga
acccctggtgcagcgggccctccaggtctaaagggaggagaaggcctacctggtattgca
ggatctaatggtgccacaggagagaggggtcccgctgggccagctggtgctattggccag
ccaggacggccaggcagcgttggtcctgttgggcctgttggagagaaaggcgagccagga
gagaagggtgctgtggggccagctgggcatgatggggaaccaggacctacagggctgcct
ggggttgcaggatcgcctggtcctcctggagaggacggagacaagggagagccaggagga
ccaggccagaaaggcagcaaaggagacaaaggagaagctggaccatcaggacctgttggt
attcaaggacctgtgggccaatcaggaccatctggtgcagatggtgagccaggtcctcgt
ggacaaattggtgtgtatggggcaaaaggtgatgaaggacctagggggtttaggggacca
actggtccctctggactacagggcatgccaggaccaccaggggagaaaggagaaagcggt
catgttggtttaatggggcctccaggacagcatggcccacgtggacctcagggacctatt
ggtgcagagggcccacctggtttgcctggtggagttggccagcctggacttgttggagag
aagggtgaggatggagaagcaggagaccctggagcagttggagagcctggtcctcctggt
actaaaggtgatgtaggagagaagggagactctggcccccctggagcagctgggcctcct
ggaaccagaggttctccaggagaagatggatccaaaggcaaccttggtcccattggattt
cctggagatttaggacctcctggagaaccaggtgccaatggggttgatggcacacctgga
cctaaaggagacaatggagaacttgggaaagcaggaccaccaggagcctctggagaacct
ggtcctccaggacctcctggtcgaagaggtcatgttggtgctgcaggaaaagaagggaaa
caaggcatgaaaggagccaaaggtgctacaggaacttcaggtttagtgggaaagacaggc
ccagtaggacctcaagggccaccaggaaggcctgggccagaaggactccgaggcattcca
ggtcctgcgggtgaacaagggttaaacggaccaccaggacaaactggaccaccaggacca
atagggccaccaggacttccaggactaaaaggagaccctggaaaaaagggagaaaaaggt
catggagggttgattggtttaattggccccccaggggaacctggtgagaaaggagacaga
ggcttgccaggaatccaaggtttacaaggaactaaaggagatgagggtgtgactggccca
cctggtcccatcggcgcaccaggtcaacctggtctgtctggtccagctggtgagaaagga
tcgaagggagagccgggtggatttggtatcatcggtgatccaggtcctgctggtcctcca
ggaccccctgggccacctgcaacagtggttcagaccctgccaatttgggagggaaggcgg
aagagaagaaggcactcagatcaaacagaaggaactgctgtgtcaagggagaaaaatgta
cattctggaactgaggacttccttcaaggagatcagcctttggaggatgctgagggaatg
gaggaagtctttgccaccctctcatctatgaaaaatgaagtggagttcatgaggagacct
cttggaacatttgacagccctgcccgaacctgcaaagaattgatgatgattcaacctaac
tacaaagatggggactactggatagatcctaaccagggctgccacagagactccattaag
gtcttttgtaacttcacagcctttggagagacatgtctctaccctgacaaaaggatcaaa
atggtgaaattagcagcatggagcaaagagaagccaggaacctggtttagccaatacaag
aaaggcaagcagttttcttacattgacagcgatgggaaccctgtgcatgtagtccagttg
accttcctgaagcttttaagcgccacagccaagcagagcttcacctatacctgccagaat
tcagcaggctggtttgacagcacctcccactcctaccagcatgccctccgcttccggggt
agcaacgatgaggagctcacacaagccaaaagccccttcatcacagcagtgcatgatgga
tgccagatccgcaaaggacaggaaaggacagttttagagattgactccccctcagcagag
ctgctcccgattatagatgtggctccagcagactttggcagcaacaaccaaaagtttgga
ttccaagttggacaagtgtgcttcactggttaa
DBGET
integrated database retrieval system
