Kryptolebias marmoratus (mangrove rivulus): 108244152
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Entry
108244152 CDS
T05608
Name
(RefSeq) probable ribonuclease ZC3H12C isoform X1
KO
K18668
ribonuclease ZC3H12 [EC:3.1.-.-]
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kmr03019
]
108244152
Messenger RNA biogenesis [BR:
kmr03019
]
Eukaryotic type
mRNA degradation factors
Other degradation factors
RNases
108244152
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_Zc3h12a
Regnase_1_C
UBA_6
zf-CCCH_4
UBA_N4BP1_C
zf-CCCH_2
Motif
Other DBs
NCBI-GeneID:
108244152
NCBI-ProteinID:
XP_017285563
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All DBs
Position
LG23:11128012..11146923
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AA seq
938 aa
AA seq
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MGQKDHVEAGAGHVLDLGSGLEYLHVAGADRQAGGADGPPAMEEQGETPSDGDNAAASPP
PLARLEESSGSRAEREPAQSSSAAHDGGEATCAYSKNTHQLLCRTPCVDLGTDGPPEPPG
EERDPPKSPASTPEPVSEARGKAYQAKLDFALKLGYSEETVRLVLSKLGPDTLINDILGE
LVKLGTKSDSEQPVGILTSTSSTSSSASSCGCSDILDGQRSDSPCSSDSVCDQDNLRPIV
VDGSNVAMSHGNKEVFSCQGIQLAVDWFQERGHQNITVFVPAWRKEQSRPDAPITGKHNK
PFARTCAAARLSITLTSTDQEILRRLEKEKILVFTPSRRVQGRRVVCYDDRFIVKLAYES
DGIIVSNDNYRDLANEKPEWKKFIDERLLMYSFVNDKFMPPDDPLGRHGPSLENFLRKKP
VMPEQKKQPCPYGKKCTYGHKCKYYHPERGAQPQRAVADELRATAKTCVASKNQGDTGLV
KSHSVPAGTIEAKKGAPKRQSDPSIRALSYSDAEEKLLAKSRAEGHSNMSPALAGPPSGL
SLPQDQQSRAVTHLSAPGHELYPHCESPDIGYYCVTRAYSGLSLTSRRSPDCRFPTDVDL
RHGSVGSTGSECGSESSISCSSSSCDSYSERSCPGCPPDPLLEDSIHFTNPHSRLYPPHV
SSNHELCTLHAAEYQNIPHSHTSNPGVHTYHLSSACGQSCIHDQPPPEAPPKRPLYPLPP
HLQHQPLATRSSCPGDYHSLPQSNLQPPGSPLGRCLAPTRAESVSDSHLYEHLSAPHHHR
PKAVPSWDSYYRQPLLPSPRYEPSTYQSLPDTRQASWHALPWPQDSYTQHHSSHPALHPS
PTRYLSHPPPPAHSPHPPYSPHGSHLAVPPHALPPYVPQHPESPVLGRYEDVREKVYINL
CNIFPSELVSRVMARSPHVTDPQQLAAAILAEKAQSGY
NT seq
2817 nt
NT seq
+upstream
nt +downstream
nt
atgggtcagaaggaccatgtggaggcaggagcaggccacgtcctcgacctggggtcgggc
ttggagtacctccacgtagcaggggctgaccggcaagctggcggcgctgacgggccccct
gctatggaggagcagggggagacccccagcgacggcgacaacgcagcagccagcccccct
ccgttggcccggctggaggaaagcagtggttccagagcggagcgcgagccggcacagtct
tccagcgccgctcacgatggaggagaggccacatgtgcttacagtaaaaacacccaccag
ctgctgtgtcggactccatgtgtggacctgggcactgacgggcctcctgagcctccggga
gaggaacgtgacccgcccaagtctccggcctccacgcccgaaccggtgtccgaggcgagg
gggaaagcctaccaggccaagttggacttcgccctgaagctgggctactctgaagagaca
gtgcgactggtgctctccaagcttggtcctgacactctcatcaacgacatactgggagaa
ctggtcaaactgggcaccaagtccgacagcgagcagcccgttgggatattaacctccacc
tcatccacgtcttcttcggcctcctcttgcgggtgctctgacatcctggacggccagcgg
tcggactcgccgtgctcctcagactccgtctgcgaccaggacaacctgcggccgatcgta
gtggatggcagtaacgtcgccatgagccacggcaacaaggaggtgttttcctgtcagggt
atccagctggctgtggattggttccaggagcgtggtcatcaaaacatcacagtttttgtg
cctgcgtggaggaaagagcagtcccgccccgatgccccgataacaggcaagcacaacaaa
ccgtttgcacgtacctgtgccgcagcacggctttctataactctcacttctacagatcag
gagattctgcgtcgccttgagaaggaaaaaatcctggtcttcactccctcacggcgcgtc
caaggtcgccgcgtggtctgctatgacgatcgcttcatcgtcaagctggcctatgagtca
gacggcatcatcgtctccaatgacaactacagagacctggctaacgagaagcccgagtgg
aagaagttcatagacgagcgtctactcatgtattctttcgtcaacgacaaattcatgcca
cctgatgatcctcttggccgtcatggacccagtctagaaaacttcctgaggaaaaagccc
gtcatgcctgagcagaagaaacagccctgtccatacggaaagaagtgcacctatggccac
aagtgtaagtactaccaccctgaaagaggggctcagcctcagcgagctgtggctgatgag
ctgcgagccaccgccaagacctgcgtcgcctccaagaaccagggggacacgggccttgtg
aagagccacagtgtgccagcgggcaccatcgaggcaaaaaaaggtgctcccaaaagacaa
tctgaccccagcattcgagctctgtcatacagtgacgctgaggagaagctgctggccaaa
agccgggcagaaggccacagcaacatgtctccagccttggcaggacccccatctggcctc
agccttccgcaggatcaacaatccagagcagtaacgcatttatcagctcccggccacgag
ctctaccctcactgcgagtctccagacatcggctactactgtgtaacacgggcgtattct
ggcctgagccttacgtcccgaaggagcccggactgccgcttccccaccgacgtggacctg
cgacatggctcggtgggctcgacgggctccgaatgtggcagtgaaagcagcatcagttgc
agcagcagcagctgtgactcctacagtgaaagatcctgtcctgggtgtcctccggatccc
ctactggaggacagcattcatttcacaaacccccacagccgcctgtatccccctcatgtc
tcatctaaccatgaactgtgcactctgcatgctgccgaatatcagaatattccacacagc
cacacatccaacccgggagtgcacacctaccacctgagctcagcgtgtgggcagagctgc
attcacgaccaaccaccgccagaagctcccccgaagcggcctctctaccccctgcctccc
cacctccaacaccagccgctggctacacgctccagctgccccggcgactaccactctctg
ccccagtccaacctccagccccccggctcgcccctcggccgctgcctggccccaacgcga
gctgaaagcgtctccgactcccacctttatgagcacctctcggcaccgcaccaccacagg
cctaaagccgtgcccagctgggactcatactacaggcagcccctgctgccgtcgcccagg
tacgagccatcgacctatcagagcctgccagacacgcggcaggcatcctggcacgccctg
ccgtggccgcaggacagctacacccagcaccactcgtctcacccagctctccacccgtcg
cccacacgctacctcagccacccaccacctccagcccactccccccacccaccttactcc
ccccacggctctcatcttgcagtccccccccacgctcttcccccttacgtcccgcagcac
cccgagtcccctgtgcttggccgctatgaggacgttcgggagaaagtgtacataaacctg
tgtaacatcttcccctcggagctggtgagtcgcgtaatggccagaagcccccacgtcacg
gatccccagcagctggctgctgccatcctcgcagagaaagctcaaagcggctactga
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